Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1922 and GFF1923 are separated by 32 nucleotides GFF1923 and GFF1924 are separated by 346 nucleotides GFF1924 and GFF1925 are separated by 82 nucleotides
GFF1922 - Ammonium transporter, at 795,924 to 797,342
GFF1922
GFF1923 - Nitrogen regulatory protein P-II, at 797,375 to 797,713
GFF1923
GFF1924 - MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein, at 798,060 to 799,595
GFF1924
GFF1925 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 799,678 to 801,117
GFF1925
Position (kb) 798
799
800 Strain fitness (log2 ratio) -2
-1
0
1 at 797.562 kb on + strand, within GFF1923 at 797.562 kb on + strand, within GFF1923 at 797.562 kb on + strand, within GFF1923 at 797.563 kb on - strand, within GFF1923 at 797.563 kb on - strand, within GFF1923 at 797.563 kb on - strand, within GFF1923 at 797.647 kb on + strand, within GFF1923 at 797.648 kb on - strand, within GFF1923 at 797.730 kb on + strand at 797.730 kb on + strand at 797.730 kb on + strand at 797.730 kb on + strand at 797.730 kb on + strand at 797.731 kb on - strand at 797.731 kb on - strand at 797.731 kb on - strand at 797.815 kb on + strand at 797.857 kb on + strand at 797.858 kb on - strand at 797.862 kb on + strand at 797.891 kb on - strand at 797.891 kb on - strand at 797.891 kb on - strand at 798.008 kb on + strand at 798.658 kb on - strand, within GFF1924 at 799.200 kb on + strand, within GFF1924 at 799.630 kb on + strand at 799.630 kb on + strand at 799.631 kb on - strand at 799.631 kb on - strand at 799.684 kb on + strand at 799.684 kb on + strand at 799.684 kb on + strand at 799.685 kb on - strand at 799.685 kb on - strand at 800.042 kb on - strand, within GFF1925 at 800.293 kb on + strand, within GFF1925 at 800.294 kb on - strand, within GFF1925 at 800.320 kb on + strand, within GFF1925
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 797,562 + GFF1923 0.55 +0.1 797,562 + GFF1923 0.55 -0.7 797,562 + GFF1923 0.55 +0.0 797,563 - GFF1923 0.55 +0.5 797,563 - GFF1923 0.55 +0.8 797,563 - GFF1923 0.55 +0.0 797,647 + GFF1923 0.80 -0.2 797,648 - GFF1923 0.81 -1.2 797,730 + -0.0 797,730 + -0.1 797,730 + +0.4 797,730 + -0.3 797,730 + +0.3 797,731 - +0.4 797,731 - -1.0 797,731 - -1.4 797,815 + +0.7 797,857 + -1.0 797,858 - -0.6 797,862 + -2.4 797,891 - -0.4 797,891 - -1.4 797,891 - -2.1 798,008 + +0.6 798,658 - GFF1924 0.39 +0.3 799,200 + GFF1924 0.74 +0.8 799,630 + -0.1 799,630 + -0.1 799,631 - -0.1 799,631 - -0.6 799,684 + +1.6 799,684 + -0.0 799,684 + +0.1 799,685 - +0.1 799,685 - -0.4 800,042 - GFF1925 0.25 -0.6 800,293 + GFF1925 0.43 -0.8 800,294 - GFF1925 0.43 -0.5 800,320 + GFF1925 0.45 +0.1
Or see this region's nucleotide sequence