Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1807 and GFF1808 are separated by 6 nucleotides GFF1808 and GFF1809 overlap by 4 nucleotides GFF1809 and GFF1810 are separated by 4 nucleotides GFF1810 and GFF1811 are separated by 236 nucleotides
GFF1807 - Alpha/beta hydrolase, at 675,648 to 676,271
GFF1807
GFF1808 - Ferredoxin, 2Fe-2S, at 676,278 to 676,616
GFF1808
GFF1809 - Probable transmembrane protein, at 676,613 to 677,734
GFF1809
GFF1810 - Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-), at 677,739 to 678,167
GFF1810
GFF1811 - hypothetical protein, at 678,404 to 679,417
GFF1811
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 675.885 kb on - strand, within GFF1807 at 676.036 kb on + strand, within GFF1807 at 676.036 kb on + strand, within GFF1807 at 676.036 kb on + strand, within GFF1807 at 676.037 kb on - strand, within GFF1807 at 676.037 kb on - strand, within GFF1807 at 676.142 kb on + strand, within GFF1807 at 676.142 kb on + strand, within GFF1807 at 676.142 kb on + strand, within GFF1807 at 676.143 kb on - strand, within GFF1807 at 676.143 kb on - strand, within GFF1807 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.375 kb on + strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.376 kb on - strand, within GFF1808 at 676.381 kb on + strand, within GFF1808 at 676.381 kb on + strand, within GFF1808 at 676.382 kb on - strand, within GFF1808 at 676.382 kb on - strand, within GFF1808 at 676.382 kb on - strand, within GFF1808 at 676.399 kb on + strand, within GFF1808 at 676.594 kb on + strand at 676.594 kb on + strand at 676.594 kb on + strand at 676.594 kb on + strand at 676.594 kb on + strand at 676.594 kb on + strand at 676.594 kb on + strand at 676.595 kb on - strand at 676.595 kb on - strand at 676.595 kb on - strand at 676.595 kb on - strand at 676.595 kb on - strand at 676.597 kb on + strand at 676.597 kb on + strand at 676.597 kb on + strand at 676.598 kb on - strand at 676.598 kb on - strand at 676.779 kb on + strand, within GFF1809 at 676.780 kb on - strand, within GFF1809 at 676.953 kb on + strand, within GFF1809 at 676.953 kb on + strand, within GFF1809 at 676.953 kb on + strand, within GFF1809 at 676.953 kb on + strand, within GFF1809 at 676.953 kb on + strand, within GFF1809 at 676.953 kb on + strand, within GFF1809 at 676.954 kb on - strand, within GFF1809 at 676.954 kb on - strand, within GFF1809 at 676.954 kb on - strand, within GFF1809 at 676.954 kb on - strand, within GFF1809 at 676.954 kb on - strand, within GFF1809 at 676.954 kb on - strand, within GFF1809 at 677.238 kb on + strand, within GFF1809 at 677.239 kb on - strand, within GFF1809 at 677.433 kb on + strand, within GFF1809 at 677.433 kb on + strand, within GFF1809 at 677.433 kb on + strand, within GFF1809 at 677.434 kb on - strand, within GFF1809 at 677.556 kb on + strand, within GFF1809 at 677.557 kb on - strand, within GFF1809 at 677.557 kb on - strand, within GFF1809 at 677.595 kb on + strand, within GFF1809 at 677.595 kb on + strand, within GFF1809 at 677.596 kb on - strand, within GFF1809 at 677.596 kb on - strand, within GFF1809 at 677.596 kb on - strand, within GFF1809 at 677.596 kb on - strand, within GFF1809 at 677.664 kb on + strand at 677.664 kb on + strand at 677.665 kb on - strand at 677.665 kb on - strand at 677.665 kb on - strand at 677.665 kb on - strand at 677.676 kb on + strand at 677.676 kb on + strand at 677.676 kb on + strand at 677.676 kb on + strand at 677.676 kb on + strand at 677.676 kb on + strand at 677.677 kb on - strand at 677.677 kb on - strand at 677.677 kb on - strand at 677.677 kb on - strand at 677.677 kb on - strand at 677.677 kb on - strand at 677.677 kb on - strand at 678.178 kb on + strand at 678.178 kb on + strand at 678.178 kb on + strand at 678.178 kb on + strand at 678.179 kb on - strand at 678.179 kb on - strand at 678.179 kb on - strand at 678.179 kb on - strand at 678.179 kb on - strand at 678.179 kb on - strand at 678.263 kb on + strand at 678.263 kb on + strand at 678.263 kb on + strand at 678.263 kb on + strand at 678.263 kb on + strand at 678.263 kb on + strand at 678.264 kb on - strand at 678.264 kb on - strand at 678.264 kb on - strand at 678.264 kb on - strand at 678.326 kb on + strand at 678.327 kb on - strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.376 kb on + strand at 678.377 kb on - strand at 678.377 kb on - strand at 678.377 kb on - strand at 678.377 kb on - strand at 678.377 kb on - strand at 678.377 kb on - strand at 678.395 kb on + strand at 678.395 kb on + strand at 678.396 kb on - strand at 678.396 kb on - strand at 678.396 kb on - strand at 678.396 kb on - strand at 678.405 kb on + strand at 678.405 kb on + strand at 678.405 kb on + strand at 678.405 kb on + strand at 678.405 kb on + strand at 678.405 kb on + strand at 678.406 kb on - strand at 678.406 kb on - strand at 678.406 kb on - strand at 678.406 kb on - strand at 678.623 kb on - strand, within GFF1811
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 675,885 - GFF1807 0.38 +0.2 676,036 + GFF1807 0.62 -0.3 676,036 + GFF1807 0.62 -0.4 676,036 + GFF1807 0.62 +0.6 676,037 - GFF1807 0.62 -0.8 676,037 - GFF1807 0.62 +0.6 676,142 + GFF1807 0.79 -0.7 676,142 + GFF1807 0.79 -0.6 676,142 + GFF1807 0.79 +0.9 676,143 - GFF1807 0.79 +0.6 676,143 - GFF1807 0.79 -0.9 676,375 + GFF1808 0.29 +0.7 676,375 + GFF1808 0.29 -0.8 676,375 + GFF1808 0.29 +0.4 676,375 + GFF1808 0.29 -0.7 676,375 + GFF1808 0.29 +0.5 676,375 + GFF1808 0.29 -0.1 676,375 + GFF1808 0.29 -0.7 676,375 + GFF1808 0.29 +0.3 676,375 + GFF1808 0.29 -1.0 676,375 + GFF1808 0.29 -0.1 676,375 + GFF1808 0.29 +0.8 676,375 + GFF1808 0.29 -0.7 676,375 + GFF1808 0.29 -0.1 676,376 - GFF1808 0.29 +0.3 676,376 - GFF1808 0.29 +0.8 676,376 - GFF1808 0.29 +0.3 676,376 - GFF1808 0.29 -0.4 676,376 - GFF1808 0.29 -2.3 676,376 - GFF1808 0.29 -1.2 676,376 - GFF1808 0.29 +0.2 676,376 - GFF1808 0.29 -0.1 676,376 - GFF1808 0.29 +0.6 676,376 - GFF1808 0.29 +0.3 676,376 - GFF1808 0.29 -0.7 676,376 - GFF1808 0.29 -0.2 676,376 - GFF1808 0.29 -0.8 676,376 - GFF1808 0.29 +0.0 676,376 - GFF1808 0.29 -0.0 676,376 - GFF1808 0.29 +0.2 676,381 + GFF1808 0.30 +0.4 676,381 + GFF1808 0.30 +0.0 676,382 - GFF1808 0.31 -0.0 676,382 - GFF1808 0.31 -0.6 676,382 - GFF1808 0.31 -0.3 676,399 + GFF1808 0.36 +0.8 676,594 + +0.5 676,594 + -0.1 676,594 + -0.2 676,594 + +0.0 676,594 + -0.1 676,594 + -0.4 676,594 + +0.8 676,595 - -0.2 676,595 - +0.4 676,595 - -1.7 676,595 - +0.1 676,595 - +0.3 676,597 + +0.3 676,597 + +1.0 676,597 + -0.4 676,598 - -0.2 676,598 - -0.5 676,779 + GFF1809 0.15 +0.6 676,780 - GFF1809 0.15 -1.2 676,953 + GFF1809 0.30 +0.9 676,953 + GFF1809 0.30 -0.4 676,953 + GFF1809 0.30 +0.0 676,953 + GFF1809 0.30 +0.0 676,953 + GFF1809 0.30 -0.1 676,953 + GFF1809 0.30 -0.4 676,954 - GFF1809 0.30 -0.3 676,954 - GFF1809 0.30 -0.4 676,954 - GFF1809 0.30 -0.5 676,954 - GFF1809 0.30 -0.5 676,954 - GFF1809 0.30 -0.3 676,954 - GFF1809 0.30 -0.0 677,238 + GFF1809 0.56 +0.8 677,239 - GFF1809 0.56 -1.3 677,433 + GFF1809 0.73 +0.0 677,433 + GFF1809 0.73 -0.6 677,433 + GFF1809 0.73 +0.8 677,434 - GFF1809 0.73 -1.1 677,556 + GFF1809 0.84 -0.1 677,557 - GFF1809 0.84 -0.1 677,557 - GFF1809 0.84 +0.6 677,595 + GFF1809 0.88 -0.5 677,595 + GFF1809 0.88 -0.2 677,596 - GFF1809 0.88 -0.7 677,596 - GFF1809 0.88 -0.3 677,596 - GFF1809 0.88 -0.0 677,596 - GFF1809 0.88 -0.3 677,664 + +0.0 677,664 + +0.9 677,665 - +0.1 677,665 - -0.4 677,665 - -1.2 677,665 - -0.3 677,676 + -0.3 677,676 + -0.2 677,676 + +0.4 677,676 + +0.3 677,676 + +0.3 677,676 + +0.0 677,677 - +0.2 677,677 - +0.1 677,677 - -0.8 677,677 - -0.2 677,677 - +0.0 677,677 - -0.4 677,677 - +0.0 678,178 + +0.1 678,178 + +0.2 678,178 + -0.2 678,178 + +0.3 678,179 - +0.2 678,179 - +0.6 678,179 - +0.2 678,179 - -0.3 678,179 - +1.0 678,179 - -1.6 678,263 + -0.2 678,263 + -0.2 678,263 + +0.1 678,263 + -0.4 678,263 + -0.4 678,263 + -0.3 678,264 - +0.3 678,264 - +0.8 678,264 - +0.1 678,264 - +0.4 678,326 + +1.8 678,327 - +0.4 678,376 + +0.5 678,376 + +0.3 678,376 + +0.1 678,376 + +0.3 678,376 + -0.4 678,376 + -0.7 678,376 + -0.1 678,377 - -0.2 678,377 - -0.2 678,377 - -0.3 678,377 - -0.5 678,377 - +1.6 678,377 - -0.8 678,395 + -0.3 678,395 + +0.4 678,396 - -0.0 678,396 - +0.4 678,396 - +0.8 678,396 - +0.4 678,405 + +0.2 678,405 + -0.4 678,405 + +0.3 678,405 + -0.7 678,405 + -0.3 678,405 + +0.1 678,406 - -0.5 678,406 - -0.2 678,406 - -0.6 678,406 - +0.6 678,623 - GFF1811 0.22 -0.4
Or see this region's nucleotide sequence