Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1778 and GFF1779 overlap by 4 nucleotides GFF1779 and GFF1780 are separated by 12 nucleotides GFF1780 and GFF1781 overlap by 1 nucleotides
GFF1778 - ATP-dependent DNA helicase Rep, at 642,595 to 644,673
GFF1778
GFF1779 - hypothetical protein, at 644,670 to 645,167
GFF1779
GFF1780 - hypothetical protein, at 645,180 to 645,431
GFF1780
GFF1781 - TRAP-type C4-dicarboxylate transport system, large permease component, at 645,431 to 646,714
GFF1781
Position (kb) 644
645
646 Strain fitness (log2 ratio) -2
-1
0
1 at 643.693 kb on + strand, within GFF1778 at 643.693 kb on + strand, within GFF1778 at 643.693 kb on + strand, within GFF1778 at 643.694 kb on - strand, within GFF1778 at 643.694 kb on - strand, within GFF1778 at 643.870 kb on + strand, within GFF1778 at 644.443 kb on + strand, within GFF1778 at 644.443 kb on + strand, within GFF1778 at 644.443 kb on + strand, within GFF1778 at 644.443 kb on + strand, within GFF1778 at 644.444 kb on - strand, within GFF1778 at 644.444 kb on - strand, within GFF1778 at 644.805 kb on + strand, within GFF1779 at 644.806 kb on - strand, within GFF1779 at 644.901 kb on + strand, within GFF1779 at 645.281 kb on - strand, within GFF1780 at 645.839 kb on + strand, within GFF1781 at 645.840 kb on - strand, within GFF1781 at 645.840 kb on - strand, within GFF1781 at 645.946 kb on - strand, within GFF1781 at 645.946 kb on - strand, within GFF1781 at 645.946 kb on - strand, within GFF1781 at 645.972 kb on + strand, within GFF1781 at 645.972 kb on + strand, within GFF1781 at 645.972 kb on + strand, within GFF1781 at 645.972 kb on + strand, within GFF1781 at 645.972 kb on + strand, within GFF1781 at 645.972 kb on + strand, within GFF1781 at 645.972 kb on + strand, within GFF1781 at 645.973 kb on - strand, within GFF1781 at 645.973 kb on - strand, within GFF1781 at 645.973 kb on - strand, within GFF1781 at 645.973 kb on - strand, within GFF1781 at 645.973 kb on - strand, within GFF1781
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 643,693 + GFF1778 0.53 -0.3 643,693 + GFF1778 0.53 +0.3 643,693 + GFF1778 0.53 +0.3 643,694 - GFF1778 0.53 -0.6 643,694 - GFF1778 0.53 +0.2 643,870 + GFF1778 0.61 -0.9 644,443 + GFF1778 0.89 +0.8 644,443 + GFF1778 0.89 -0.5 644,443 + GFF1778 0.89 -1.3 644,443 + GFF1778 0.89 +1.2 644,444 - GFF1778 0.89 -0.1 644,444 - GFF1778 0.89 -1.4 644,805 + GFF1779 0.27 +0.7 644,806 - GFF1779 0.27 +1.2 644,901 + GFF1779 0.46 +0.0 645,281 - GFF1780 0.40 -0.0 645,839 + GFF1781 0.32 -0.3 645,840 - GFF1781 0.32 +0.3 645,840 - GFF1781 0.32 -0.2 645,946 - GFF1781 0.40 -0.6 645,946 - GFF1781 0.40 +1.2 645,946 - GFF1781 0.40 +0.0 645,972 + GFF1781 0.42 +0.1 645,972 + GFF1781 0.42 -1.4 645,972 + GFF1781 0.42 -0.9 645,972 + GFF1781 0.42 -0.6 645,972 + GFF1781 0.42 -2.1 645,972 + GFF1781 0.42 +0.4 645,972 + GFF1781 0.42 +0.2 645,973 - GFF1781 0.42 -0.4 645,973 - GFF1781 0.42 +0.1 645,973 - GFF1781 0.42 -0.2 645,973 - GFF1781 0.42 +0.2 645,973 - GFF1781 0.42 -0.2
Or see this region's nucleotide sequence