Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1657 and GFF1658 overlap by 4 nucleotides GFF1658 and GFF1659 are separated by 42 nucleotides GFF1659 and GFF1660 are separated by 7 nucleotides
GFF1657 - Transcriptional regulator, IclR family, at 509,912 to 510,784
GFF1657
GFF1658 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 510,781 to 511,710
GFF1658
GFF1659 - Probable lipoprotein transmembrane, at 511,753 to 512,457
GFF1659
GFF1660 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 512,465 to 514,837
GFF1660
Position (kb) 510
511
512 Strain fitness (log2 ratio) -2
-1
0
1
2 at 509.951 kb on + strand at 509.951 kb on + strand at 509.952 kb on - strand at 509.952 kb on - strand at 509.952 kb on - strand at 509.952 kb on - strand at 510.059 kb on + strand, within GFF1657 at 510.059 kb on + strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.060 kb on - strand, within GFF1657 at 510.278 kb on + strand, within GFF1657 at 510.278 kb on + strand, within GFF1657 at 510.279 kb on - strand, within GFF1657 at 510.497 kb on + strand, within GFF1657 at 510.497 kb on + strand, within GFF1657 at 510.497 kb on + strand, within GFF1657 at 510.498 kb on - strand, within GFF1657 at 510.498 kb on - strand, within GFF1657 at 510.498 kb on - strand, within GFF1657 at 510.853 kb on + strand at 510.853 kb on + strand at 510.853 kb on + strand at 510.854 kb on - strand at 510.854 kb on - strand at 510.854 kb on - strand at 510.854 kb on - strand at 510.913 kb on + strand, within GFF1658 at 510.913 kb on + strand, within GFF1658 at 510.913 kb on + strand, within GFF1658 at 510.913 kb on + strand, within GFF1658 at 510.913 kb on + strand, within GFF1658 at 510.913 kb on + strand, within GFF1658 at 510.914 kb on - strand, within GFF1658 at 510.914 kb on - strand, within GFF1658 at 510.914 kb on - strand, within GFF1658 at 510.914 kb on - strand, within GFF1658 at 511.030 kb on + strand, within GFF1658 at 511.030 kb on + strand, within GFF1658 at 511.031 kb on - strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.078 kb on + strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.079 kb on - strand, within GFF1658 at 511.156 kb on + strand, within GFF1658 at 511.156 kb on + strand, within GFF1658 at 511.157 kb on - strand, within GFF1658 at 511.248 kb on - strand, within GFF1658 at 511.324 kb on + strand, within GFF1658 at 511.324 kb on + strand, within GFF1658 at 511.324 kb on + strand, within GFF1658 at 511.324 kb on + strand, within GFF1658 at 511.325 kb on - strand, within GFF1658 at 511.325 kb on - strand, within GFF1658 at 511.325 kb on - strand, within GFF1658 at 511.325 kb on - strand, within GFF1658 at 511.325 kb on - strand, within GFF1658 at 511.688 kb on + strand at 511.688 kb on + strand at 511.688 kb on + strand at 511.689 kb on - strand at 511.837 kb on + strand, within GFF1659 at 511.837 kb on + strand, within GFF1659 at 511.837 kb on + strand, within GFF1659 at 511.837 kb on + strand, within GFF1659 at 511.838 kb on - strand, within GFF1659 at 511.838 kb on - strand, within GFF1659 at 511.838 kb on - strand, within GFF1659 at 511.933 kb on + strand, within GFF1659 at 511.933 kb on + strand, within GFF1659 at 511.934 kb on - strand, within GFF1659 at 512.125 kb on + strand, within GFF1659 at 512.125 kb on + strand, within GFF1659 at 512.126 kb on - strand, within GFF1659 at 512.126 kb on - strand, within GFF1659 at 512.126 kb on - strand, within GFF1659 at 512.134 kb on + strand, within GFF1659 at 512.146 kb on + strand, within GFF1659 at 512.147 kb on - strand, within GFF1659 at 512.200 kb on + strand, within GFF1659 at 512.200 kb on + strand, within GFF1659 at 512.201 kb on - strand, within GFF1659 at 512.201 kb on - strand, within GFF1659 at 512.242 kb on + strand, within GFF1659 at 512.242 kb on + strand, within GFF1659 at 512.243 kb on - strand, within GFF1659 at 512.243 kb on - strand, within GFF1659 at 512.263 kb on + strand, within GFF1659 at 512.266 kb on + strand, within GFF1659 at 512.267 kb on - strand, within GFF1659 at 512.320 kb on + strand, within GFF1659 at 512.321 kb on - strand, within GFF1659 at 512.321 kb on - strand, within GFF1659
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 509,951 + -0.1 509,951 + -0.3 509,952 - -0.1 509,952 - -0.3 509,952 - +0.0 509,952 - -0.2 510,059 + GFF1657 0.17 -0.5 510,059 + GFF1657 0.17 +0.1 510,060 - GFF1657 0.17 +0.6 510,060 - GFF1657 0.17 +1.2 510,060 - GFF1657 0.17 +1.2 510,060 - GFF1657 0.17 -0.1 510,278 + GFF1657 0.42 +0.4 510,278 + GFF1657 0.42 -0.3 510,279 - GFF1657 0.42 +0.0 510,497 + GFF1657 0.67 +1.3 510,497 + GFF1657 0.67 +0.2 510,497 + GFF1657 0.67 +0.2 510,498 - GFF1657 0.67 -0.9 510,498 - GFF1657 0.67 +0.1 510,498 - GFF1657 0.67 -0.1 510,853 + -0.3 510,853 + -0.1 510,853 + -0.5 510,854 - -0.3 510,854 - -0.3 510,854 - -0.2 510,854 - +0.8 510,913 + GFF1658 0.14 +0.1 510,913 + GFF1658 0.14 +1.8 510,913 + GFF1658 0.14 +0.2 510,913 + GFF1658 0.14 +0.2 510,913 + GFF1658 0.14 -0.2 510,913 + GFF1658 0.14 -0.3 510,914 - GFF1658 0.14 +0.4 510,914 - GFF1658 0.14 -1.0 510,914 - GFF1658 0.14 -0.0 510,914 - GFF1658 0.14 +0.2 511,030 + GFF1658 0.27 +0.4 511,030 + GFF1658 0.27 +0.1 511,031 - GFF1658 0.27 -0.9 511,078 + GFF1658 0.32 +0.3 511,078 + GFF1658 0.32 +0.1 511,078 + GFF1658 0.32 +0.3 511,078 + GFF1658 0.32 -0.5 511,078 + GFF1658 0.32 -0.5 511,078 + GFF1658 0.32 +0.4 511,078 + GFF1658 0.32 -1.5 511,079 - GFF1658 0.32 -0.0 511,079 - GFF1658 0.32 +0.1 511,079 - GFF1658 0.32 +0.7 511,079 - GFF1658 0.32 +0.1 511,079 - GFF1658 0.32 -0.4 511,079 - GFF1658 0.32 +1.6 511,079 - GFF1658 0.32 +1.6 511,156 + GFF1658 0.40 -0.0 511,156 + GFF1658 0.40 -0.7 511,157 - GFF1658 0.40 -0.2 511,248 - GFF1658 0.50 +0.5 511,324 + GFF1658 0.58 -0.3 511,324 + GFF1658 0.58 -0.4 511,324 + GFF1658 0.58 +0.6 511,324 + GFF1658 0.58 -0.1 511,325 - GFF1658 0.58 -0.3 511,325 - GFF1658 0.58 +0.6 511,325 - GFF1658 0.58 -1.0 511,325 - GFF1658 0.58 -0.9 511,325 - GFF1658 0.58 +0.1 511,688 + -0.0 511,688 + -1.5 511,688 + +1.5 511,689 - -2.2 511,837 + GFF1659 0.12 +0.5 511,837 + GFF1659 0.12 -0.5 511,837 + GFF1659 0.12 +1.0 511,837 + GFF1659 0.12 +0.1 511,838 - GFF1659 0.12 +0.1 511,838 - GFF1659 0.12 -0.4 511,838 - GFF1659 0.12 +0.5 511,933 + GFF1659 0.26 -0.2 511,933 + GFF1659 0.26 -0.4 511,934 - GFF1659 0.26 -0.1 512,125 + GFF1659 0.53 -0.3 512,125 + GFF1659 0.53 -0.4 512,126 - GFF1659 0.53 -1.0 512,126 - GFF1659 0.53 -0.2 512,126 - GFF1659 0.53 +0.2 512,134 + GFF1659 0.54 -0.2 512,146 + GFF1659 0.56 -0.3 512,147 - GFF1659 0.56 -1.4 512,200 + GFF1659 0.63 -0.1 512,200 + GFF1659 0.63 +0.3 512,201 - GFF1659 0.64 -0.3 512,201 - GFF1659 0.64 +0.7 512,242 + GFF1659 0.69 +0.0 512,242 + GFF1659 0.69 -0.0 512,243 - GFF1659 0.70 -0.1 512,243 - GFF1659 0.70 -1.3 512,263 + GFF1659 0.72 -0.4 512,266 + GFF1659 0.73 -0.2 512,267 - GFF1659 0.73 -0.9 512,320 + GFF1659 0.80 -0.5 512,321 - GFF1659 0.81 -1.5 512,321 - GFF1659 0.81 -0.6
Or see this region's nucleotide sequence