Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1641 and GFF1642 are separated by 6 nucleotides GFF1642 and GFF1643 are separated by 1 nucleotides GFF1643 and GFF1644 are separated by 7 nucleotides
GFF1641 - Phytanoyl-CoA dioxygenase, at 496,354 to 497,172
GFF1641
GFF1642 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 497,179 to 497,955
GFF1642
GFF1643 - Dihydropyrimidinase (EC 3.5.2.2), at 497,957 to 499,372
GFF1643
GFF1644 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 499,380 to 500,321
GFF1644
Position (kb) 497
498
499
500 Strain fitness (log2 ratio) -1
0
1
2 at 497.137 kb on + strand at 497.622 kb on - strand, within GFF1642 at 498.511 kb on - strand, within GFF1643 at 498.541 kb on - strand, within GFF1643 at 498.565 kb on - strand, within GFF1643 at 498.658 kb on - strand, within GFF1643 at 498.744 kb on + strand, within GFF1643 at 498.745 kb on - strand, within GFF1643 at 498.900 kb on + strand, within GFF1643 at 499.005 kb on + strand, within GFF1643 at 499.317 kb on + strand at 499.318 kb on - strand at 499.549 kb on + strand, within GFF1644 at 499.550 kb on - strand, within GFF1644 at 499.570 kb on + strand, within GFF1644 at 499.570 kb on + strand, within GFF1644 at 499.570 kb on + strand, within GFF1644 at 499.862 kb on - strand, within GFF1644 at 499.894 kb on + strand, within GFF1644 at 500.285 kb on - strand at 500.285 kb on - strand at 500.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 497,137 + +1.6 497,622 - GFF1642 0.57 +0.1 498,511 - GFF1643 0.39 +0.9 498,541 - GFF1643 0.41 +1.8 498,565 - GFF1643 0.43 +0.7 498,658 - GFF1643 0.50 -0.9 498,744 + GFF1643 0.56 -0.1 498,745 - GFF1643 0.56 -1.0 498,900 + GFF1643 0.67 -0.2 499,005 + GFF1643 0.74 +1.0 499,317 + +0.2 499,318 - -0.2 499,549 + GFF1644 0.18 -1.5 499,550 - GFF1644 0.18 +0.6 499,570 + GFF1644 0.20 +0.3 499,570 + GFF1644 0.20 -0.1 499,570 + GFF1644 0.20 -0.6 499,862 - GFF1644 0.51 +0.6 499,894 + GFF1644 0.55 -0.0 500,285 - +1.0 500,285 - -0.3 500,355 + +0.3
Or see this region's nucleotide sequence