Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1611 and GFF1612 are separated by 5 nucleotides GFF1612 and GFF1613 are separated by 4 nucleotides GFF1613 and GFF1614 are separated by 21 nucleotides
GFF1611 - Glycine cleavage system transcriptional activator, at 465,005 to 466,033
GFF1611
GFF1612 - Membrane protein, putative, at 466,039 to 466,956
GFF1612
GFF1613 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 466,961 to 467,677
GFF1613
GFF1614 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 467,699 to 469,660
GFF1614
Position (kb) 466
467
468 Strain fitness (log2 ratio) -2
-1
0
1 at 466.153 kb on + strand, within GFF1612 at 466.153 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.214 kb on - strand, within GFF1612 at 466.214 kb on - strand, within GFF1612 at 466.214 kb on - strand, within GFF1612 at 466.415 kb on + strand, within GFF1612 at 466.416 kb on - strand, within GFF1612 at 466.550 kb on - strand, within GFF1612 at 466.613 kb on + strand, within GFF1612 at 466.613 kb on + strand, within GFF1612 at 466.614 kb on - strand, within GFF1612 at 466.614 kb on - strand, within GFF1612 at 466.614 kb on - strand, within GFF1612 at 466.792 kb on + strand, within GFF1612 at 466.792 kb on + strand, within GFF1612 at 466.897 kb on + strand at 466.898 kb on - strand at 466.955 kb on - strand at 467.037 kb on + strand, within GFF1613 at 467.113 kb on - strand, within GFF1613 at 467.263 kb on - strand, within GFF1613 at 467.611 kb on + strand at 467.611 kb on + strand at 467.864 kb on + strand at 467.865 kb on - strand at 467.942 kb on + strand, within GFF1614 at 467.942 kb on + strand, within GFF1614 at 467.943 kb on - strand, within GFF1614 at 467.943 kb on - strand, within GFF1614 at 468.062 kb on + strand, within GFF1614 at 468.062 kb on + strand, within GFF1614 at 468.063 kb on - strand, within GFF1614 at 468.063 kb on - strand, within GFF1614 at 468.341 kb on + strand, within GFF1614 at 468.341 kb on + strand, within GFF1614 at 468.341 kb on + strand, within GFF1614 at 468.341 kb on + strand, within GFF1614 at 468.342 kb on - strand, within GFF1614 at 468.342 kb on - strand, within GFF1614 at 468.342 kb on - strand, within GFF1614 at 468.578 kb on + strand, within GFF1614 at 468.578 kb on + strand, within GFF1614 at 468.578 kb on + strand, within GFF1614 at 468.578 kb on + strand, within GFF1614 at 468.578 kb on + strand, within GFF1614 at 468.579 kb on - strand, within GFF1614 at 468.579 kb on - strand, within GFF1614 at 468.579 kb on - strand, within GFF1614 at 468.579 kb on - strand, within GFF1614 at 468.579 kb on - strand, within GFF1614
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 466,153 + GFF1612 0.12 +0.2 466,153 + GFF1612 0.12 +1.0 466,213 + GFF1612 0.19 +1.0 466,213 + GFF1612 0.19 -0.1 466,213 + GFF1612 0.19 +0.5 466,213 + GFF1612 0.19 -0.9 466,213 + GFF1612 0.19 -0.0 466,213 + GFF1612 0.19 -0.3 466,213 + GFF1612 0.19 +0.4 466,213 + GFF1612 0.19 -0.2 466,214 - GFF1612 0.19 +0.3 466,214 - GFF1612 0.19 -0.2 466,214 - GFF1612 0.19 -0.9 466,415 + GFF1612 0.41 +1.0 466,416 - GFF1612 0.41 +0.1 466,550 - GFF1612 0.56 -0.0 466,613 + GFF1612 0.63 +0.3 466,613 + GFF1612 0.63 -0.0 466,614 - GFF1612 0.63 +0.5 466,614 - GFF1612 0.63 -1.8 466,614 - GFF1612 0.63 +0.5 466,792 + GFF1612 0.82 -0.0 466,792 + GFF1612 0.82 +1.4 466,897 + +0.0 466,898 - -0.3 466,955 - -0.1 467,037 + GFF1613 0.11 -2.1 467,113 - GFF1613 0.21 -1.9 467,263 - GFF1613 0.42 +1.0 467,611 + -0.2 467,611 + +0.4 467,864 + +0.1 467,865 - -1.2 467,942 + GFF1614 0.12 +0.3 467,942 + GFF1614 0.12 +0.6 467,943 - GFF1614 0.12 +0.5 467,943 - GFF1614 0.12 +1.3 468,062 + GFF1614 0.19 -0.4 468,062 + GFF1614 0.19 +0.4 468,063 - GFF1614 0.19 +0.0 468,063 - GFF1614 0.19 -0.8 468,341 + GFF1614 0.33 -0.0 468,341 + GFF1614 0.33 +0.3 468,341 + GFF1614 0.33 +0.5 468,341 + GFF1614 0.33 -0.1 468,342 - GFF1614 0.33 +0.3 468,342 - GFF1614 0.33 +0.5 468,342 - GFF1614 0.33 +0.0 468,578 + GFF1614 0.45 -0.7 468,578 + GFF1614 0.45 +1.3 468,578 + GFF1614 0.45 -0.0 468,578 + GFF1614 0.45 +0.1 468,578 + GFF1614 0.45 -1.0 468,579 - GFF1614 0.45 -0.5 468,579 - GFF1614 0.45 -0.3 468,579 - GFF1614 0.45 -1.5 468,579 - GFF1614 0.45 +0.4 468,579 - GFF1614 0.45 +0.2
Or see this region's nucleotide sequence