Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1607 and GFF1608 are separated by 62 nucleotides GFF1608 and GFF1609 are separated by 37 nucleotides GFF1609 and GFF1610 are separated by 26 nucleotides GFF1610 and GFF1611 are separated by 126 nucleotides
GFF1607 - putative cyclase, at 462,291 to 463,271
GFF1607
GFF1608 - Transcriptional regulator, TetR family, at 463,334 to 463,951
GFF1608
GFF1609 - Regulator of competence-specific genes, at 463,989 to 464,345
GFF1609
GFF1610 - hypothetical protein, at 464,372 to 464,878
GFF1610
GFF1611 - Glycine cleavage system transcriptional activator, at 465,005 to 466,033
GFF1611
Position (kb) 463
464
465 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 463.000 kb on + strand, within GFF1607 at 463.000 kb on + strand, within GFF1607 at 463.000 kb on + strand, within GFF1607 at 463.001 kb on - strand, within GFF1607 at 463.001 kb on - strand, within GFF1607 at 463.001 kb on - strand, within GFF1607 at 463.001 kb on - strand, within GFF1607 at 463.034 kb on - strand, within GFF1607 at 463.034 kb on - strand, within GFF1607 at 463.034 kb on - strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.051 kb on + strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.052 kb on - strand, within GFF1607 at 463.065 kb on - strand, within GFF1607 at 463.189 kb on + strand at 463.189 kb on + strand at 463.189 kb on + strand at 463.190 kb on - strand at 463.190 kb on - strand at 463.330 kb on + strand at 463.407 kb on + strand, within GFF1608 at 463.407 kb on + strand, within GFF1608 at 463.408 kb on - strand, within GFF1608 at 463.408 kb on - strand, within GFF1608 at 463.408 kb on - strand, within GFF1608 at 463.797 kb on + strand, within GFF1608 at 463.798 kb on - strand, within GFF1608 at 463.798 kb on - strand, within GFF1608 at 463.801 kb on - strand, within GFF1608 at 463.801 kb on - strand, within GFF1608 at 463.807 kb on - strand, within GFF1608 at 463.807 kb on - strand, within GFF1608 at 463.807 kb on - strand, within GFF1608 at 463.807 kb on - strand, within GFF1608 at 463.807 kb on - strand, within GFF1608 at 463.977 kb on + strand at 463.977 kb on + strand at 464.229 kb on + strand, within GFF1609 at 464.230 kb on - strand, within GFF1609 at 464.230 kb on - strand, within GFF1609 at 464.230 kb on - strand, within GFF1609 at 464.343 kb on + strand at 464.343 kb on + strand at 464.344 kb on - strand at 464.430 kb on + strand, within GFF1610 at 464.956 kb on + strand at 464.956 kb on + strand at 464.956 kb on + strand at 464.956 kb on + strand at 464.956 kb on + strand at 464.957 kb on - strand at 464.957 kb on - strand at 464.957 kb on - strand at 464.957 kb on - strand at 464.963 kb on + strand at 464.963 kb on + strand at 464.963 kb on + strand at 464.964 kb on - strand at 464.964 kb on - strand at 464.964 kb on - strand at 464.968 kb on + strand at 464.968 kb on + strand at 464.968 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 463,000 + GFF1607 0.72 +0.1 463,000 + GFF1607 0.72 +0.2 463,000 + GFF1607 0.72 +1.3 463,001 - GFF1607 0.72 -0.5 463,001 - GFF1607 0.72 -0.4 463,001 - GFF1607 0.72 -0.9 463,001 - GFF1607 0.72 -0.0 463,034 - GFF1607 0.76 +0.1 463,034 - GFF1607 0.76 -0.2 463,034 - GFF1607 0.76 -0.1 463,051 + GFF1607 0.77 -0.3 463,051 + GFF1607 0.77 -0.0 463,051 + GFF1607 0.77 -0.3 463,051 + GFF1607 0.77 -1.0 463,051 + GFF1607 0.77 +0.8 463,051 + GFF1607 0.77 +0.1 463,051 + GFF1607 0.77 -0.3 463,052 - GFF1607 0.78 +0.2 463,052 - GFF1607 0.78 -0.2 463,052 - GFF1607 0.78 +0.9 463,052 - GFF1607 0.78 +0.1 463,052 - GFF1607 0.78 -0.8 463,052 - GFF1607 0.78 +0.0 463,052 - GFF1607 0.78 -0.1 463,065 - GFF1607 0.79 -0.8 463,189 + +0.6 463,189 + -1.0 463,189 + +1.3 463,190 - -0.4 463,190 - -0.5 463,330 + +0.5 463,407 + GFF1608 0.12 -1.0 463,407 + GFF1608 0.12 -0.2 463,408 - GFF1608 0.12 +0.4 463,408 - GFF1608 0.12 -0.1 463,408 - GFF1608 0.12 -1.8 463,797 + GFF1608 0.75 +0.9 463,798 - GFF1608 0.75 -0.1 463,798 - GFF1608 0.75 +0.0 463,801 - GFF1608 0.76 +0.3 463,801 - GFF1608 0.76 +0.2 463,807 - GFF1608 0.77 +0.7 463,807 - GFF1608 0.77 -0.3 463,807 - GFF1608 0.77 -0.3 463,807 - GFF1608 0.77 -0.1 463,807 - GFF1608 0.77 +0.1 463,977 + -0.3 463,977 + -0.1 464,229 + GFF1609 0.67 +0.6 464,230 - GFF1609 0.68 +1.0 464,230 - GFF1609 0.68 +1.2 464,230 - GFF1609 0.68 -0.3 464,343 + -0.3 464,343 + +0.2 464,344 - +0.1 464,430 + GFF1610 0.11 -0.5 464,956 + -2.6 464,956 + -1.6 464,956 + -2.8 464,956 + -2.2 464,956 + -2.8 464,957 - -1.0 464,957 - -2.9 464,957 - -1.0 464,957 - -1.7 464,963 + -0.3 464,963 + -2.5 464,963 + -2.2 464,964 - -2.5 464,964 - -2.7 464,964 - -1.2 464,968 + -3.5 464,968 + -1.3 464,968 + -1.6
Or see this region's nucleotide sequence