Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1496 and GFF1497 are separated by 17 nucleotides GFF1497 and GFF1498 are separated by 47 nucleotides GFF1498 and GFF1499 are separated by 35 nucleotides
GFF1496 - beta-lactamase domain protein, at 345,390 to 346,355
GFF1496
GFF1497 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 346,373 to 347,257
GFF1497
GFF1498 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 347,305 to 348,093
GFF1498
GFF1499 - Glucarate dehydratase (EC 4.2.1.40), at 348,129 to 349,475
GFF1499
Position (kb) 347
348
349 Strain fitness (log2 ratio) -1
0
1 at 346.917 kb on + strand, within GFF1497 at 346.917 kb on + strand, within GFF1497 at 347.178 kb on + strand at 347.178 kb on + strand at 347.178 kb on + strand at 347.178 kb on + strand at 347.179 kb on - strand at 347.179 kb on - strand at 347.179 kb on - strand at 347.277 kb on + strand at 347.277 kb on + strand at 347.277 kb on + strand at 347.287 kb on + strand at 347.287 kb on + strand at 347.287 kb on + strand at 347.287 kb on + strand at 347.288 kb on - strand at 347.591 kb on + strand, within GFF1498 at 347.591 kb on + strand, within GFF1498 at 347.592 kb on - strand, within GFF1498 at 347.592 kb on - strand, within GFF1498 at 347.592 kb on - strand, within GFF1498 at 347.771 kb on + strand, within GFF1498 at 347.771 kb on + strand, within GFF1498 at 347.772 kb on - strand, within GFF1498 at 347.772 kb on - strand, within GFF1498 at 347.772 kb on - strand, within GFF1498 at 347.828 kb on + strand, within GFF1498 at 347.828 kb on + strand, within GFF1498 at 347.828 kb on + strand, within GFF1498 at 347.942 kb on + strand, within GFF1498 at 347.942 kb on + strand, within GFF1498 at 348.229 kb on + strand at 348.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 346,917 + GFF1497 0.61 +0.1 346,917 + GFF1497 0.61 -1.2 347,178 + -0.3 347,178 + +0.4 347,178 + +0.4 347,178 + -0.2 347,179 - +0.5 347,179 - +0.6 347,179 - +0.2 347,277 + -0.8 347,277 + -0.2 347,277 + -1.0 347,287 + +0.6 347,287 + +0.1 347,287 + -0.1 347,287 + -0.9 347,288 - +0.2 347,591 + GFF1498 0.36 +0.7 347,591 + GFF1498 0.36 +0.0 347,592 - GFF1498 0.36 -0.2 347,592 - GFF1498 0.36 +0.0 347,592 - GFF1498 0.36 +0.3 347,771 + GFF1498 0.59 -0.8 347,771 + GFF1498 0.59 -0.5 347,772 - GFF1498 0.59 +0.0 347,772 - GFF1498 0.59 -0.4 347,772 - GFF1498 0.59 -0.1 347,828 + GFF1498 0.66 +0.4 347,828 + GFF1498 0.66 -0.3 347,828 + GFF1498 0.66 +0.4 347,942 + GFF1498 0.81 -0.3 347,942 + GFF1498 0.81 -0.8 348,229 + +0.5 348,230 - -0.3
Or see this region's nucleotide sequence