Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1470 and GFF1471 are separated by 51 nucleotides GFF1471 and GFF1472 are separated by 9 nucleotides GFF1472 and GFF1473 overlap by 23 nucleotides
GFF1470 - transporter, putative, at 320,505 to 322,079
GFF1470
GFF1471 - hypothetical protein, at 322,131 to 322,499
GFF1471
GFF1472 - Regulatory protein, LuxR:Response regulator receiver, at 322,509 to 323,138
GFF1472
GFF1473 - Probable two-component sensor, near polyamine transporter, at 323,116 to 324,198
GFF1473
Position (kb) 322
323
324 Strain fitness (log2 ratio) -1
0
1 at 321.631 kb on + strand, within GFF1470 at 321.631 kb on + strand, within GFF1470 at 321.632 kb on - strand, within GFF1470 at 322.151 kb on - strand at 322.219 kb on + strand, within GFF1471 at 322.219 kb on + strand, within GFF1471 at 322.219 kb on + strand, within GFF1471 at 322.219 kb on + strand, within GFF1471 at 322.220 kb on - strand, within GFF1471 at 322.220 kb on - strand, within GFF1471 at 322.220 kb on - strand, within GFF1471 at 322.254 kb on - strand, within GFF1471 at 322.265 kb on - strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.285 kb on + strand, within GFF1471 at 322.286 kb on - strand, within GFF1471 at 322.286 kb on - strand, within GFF1471 at 322.301 kb on - strand, within GFF1471 at 322.315 kb on + strand, within GFF1471 at 322.510 kb on + strand at 322.534 kb on + strand at 322.768 kb on + strand, within GFF1472 at 322.768 kb on + strand, within GFF1472 at 322.768 kb on + strand, within GFF1472 at 322.768 kb on + strand, within GFF1472 at 322.838 kb on - strand, within GFF1472 at 322.873 kb on + strand, within GFF1472 at 322.873 kb on + strand, within GFF1472 at 322.874 kb on - strand, within GFF1472 at 322.874 kb on - strand, within GFF1472 at 322.874 kb on - strand, within GFF1472 at 322.889 kb on - strand, within GFF1472 at 323.033 kb on - strand, within GFF1472 at 324.068 kb on + strand, within GFF1473 at 324.069 kb on - strand, within GFF1473 at 324.069 kb on - strand, within GFF1473 at 324.089 kb on + strand, within GFF1473 at 324.089 kb on + strand, within GFF1473 at 324.089 kb on + strand, within GFF1473 at 324.089 kb on + strand, within GFF1473 at 324.090 kb on - strand at 324.090 kb on - strand at 324.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 321,631 + GFF1470 0.71 -0.9 321,631 + GFF1470 0.71 -0.6 321,632 - GFF1470 0.72 +0.4 322,151 - +0.2 322,219 + GFF1471 0.24 -1.1 322,219 + GFF1471 0.24 -0.3 322,219 + GFF1471 0.24 -0.3 322,219 + GFF1471 0.24 -0.5 322,220 - GFF1471 0.24 +0.1 322,220 - GFF1471 0.24 -0.6 322,220 - GFF1471 0.24 -0.6 322,254 - GFF1471 0.33 -0.7 322,265 - GFF1471 0.36 +0.2 322,285 + GFF1471 0.42 -0.6 322,285 + GFF1471 0.42 -0.2 322,285 + GFF1471 0.42 +0.1 322,285 + GFF1471 0.42 -0.0 322,285 + GFF1471 0.42 -0.4 322,285 + GFF1471 0.42 +0.4 322,285 + GFF1471 0.42 -0.7 322,286 - GFF1471 0.42 +0.0 322,286 - GFF1471 0.42 -1.3 322,301 - GFF1471 0.46 +0.8 322,315 + GFF1471 0.50 +0.1 322,510 + -0.4 322,534 + +0.2 322,768 + GFF1472 0.41 +0.9 322,768 + GFF1472 0.41 +1.6 322,768 + GFF1472 0.41 +0.4 322,768 + GFF1472 0.41 +0.1 322,838 - GFF1472 0.52 -0.4 322,873 + GFF1472 0.58 -0.6 322,873 + GFF1472 0.58 -1.4 322,874 - GFF1472 0.58 +1.1 322,874 - GFF1472 0.58 -0.3 322,874 - GFF1472 0.58 +0.7 322,889 - GFF1472 0.60 +0.4 323,033 - GFF1472 0.83 +0.6 324,068 + GFF1473 0.88 -0.7 324,069 - GFF1473 0.88 -1.0 324,069 - GFF1473 0.88 +0.0 324,089 + GFF1473 0.90 +0.2 324,089 + GFF1473 0.90 -0.5 324,089 + GFF1473 0.90 +0.4 324,089 + GFF1473 0.90 -0.1 324,090 - +0.7 324,090 - -0.5 324,090 - +0.1
Or see this region's nucleotide sequence