Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1344 and GFF1345 are separated by 77 nucleotides GFF1345 and GFF1346 are separated by 10 nucleotides GFF1346 and GFF1347 are separated by 6 nucleotides GFF1347 and GFF1348 are separated by 5 nucleotides
GFF1344 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 196,852 to 198,045
GFF1344
GFF1345 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 198,123 to 199,001
GFF1345
GFF1346 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 199,012 to 200,001
GFF1346
GFF1347 - FIG001196: Membrane protein YedZ, at 200,008 to 200,631
GFF1347
GFF1348 - Putative sulfite oxidase subunit YedY, at 200,637 to 201,641
GFF1348
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 198.140 kb on - strand at 198.140 kb on - strand at 198.195 kb on + strand at 198.195 kb on + strand at 198.195 kb on + strand at 198.195 kb on + strand at 198.195 kb on + strand at 198.309 kb on + strand, within GFF1345 at 198.309 kb on + strand, within GFF1345 at 198.423 kb on + strand, within GFF1345 at 198.424 kb on - strand, within GFF1345 at 198.424 kb on - strand, within GFF1345 at 198.483 kb on + strand, within GFF1345 at 198.483 kb on + strand, within GFF1345 at 198.483 kb on + strand, within GFF1345 at 198.483 kb on + strand, within GFF1345 at 198.483 kb on + strand, within GFF1345 at 198.484 kb on - strand, within GFF1345 at 198.504 kb on + strand, within GFF1345 at 198.504 kb on + strand, within GFF1345 at 198.609 kb on + strand, within GFF1345 at 198.610 kb on - strand, within GFF1345 at 198.610 kb on - strand, within GFF1345 at 198.610 kb on - strand, within GFF1345 at 198.639 kb on + strand, within GFF1345 at 198.639 kb on + strand, within GFF1345 at 198.639 kb on + strand, within GFF1345 at 198.717 kb on + strand, within GFF1345 at 198.717 kb on + strand, within GFF1345 at 198.717 kb on + strand, within GFF1345 at 198.718 kb on - strand, within GFF1345 at 199.087 kb on + strand at 199.088 kb on - strand at 199.208 kb on - strand, within GFF1346 at 199.208 kb on - strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.333 kb on + strand, within GFF1346 at 199.334 kb on - strand, within GFF1346 at 199.334 kb on - strand, within GFF1346 at 199.479 kb on - strand, within GFF1346 at 199.480 kb on + strand, within GFF1346 at 199.480 kb on + strand, within GFF1346 at 199.480 kb on + strand, within GFF1346 at 199.480 kb on + strand, within GFF1346 at 199.481 kb on - strand, within GFF1346 at 199.481 kb on - strand, within GFF1346 at 199.481 kb on - strand, within GFF1346 at 199.483 kb on + strand, within GFF1346 at 199.483 kb on + strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 199.484 kb on - strand, within GFF1346 at 200.066 kb on + strand at 200.066 kb on + strand at 200.066 kb on + strand at 200.066 kb on + strand at 200.066 kb on + strand at 200.067 kb on - strand at 200.067 kb on - strand at 200.144 kb on + strand, within GFF1347 at 200.144 kb on + strand, within GFF1347 at 200.144 kb on + strand, within GFF1347 at 200.144 kb on + strand, within GFF1347 at 200.144 kb on + strand, within GFF1347 at 200.144 kb on + strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.145 kb on - strand, within GFF1347 at 200.324 kb on + strand, within GFF1347 at 200.324 kb on + strand, within GFF1347 at 200.325 kb on - strand, within GFF1347 at 200.348 kb on + strand, within GFF1347 at 200.349 kb on - strand, within GFF1347 at 200.349 kb on - strand, within GFF1347 at 200.349 kb on - strand, within GFF1347 at 200.349 kb on - strand, within GFF1347 at 200.641 kb on + strand at 200.641 kb on + strand at 200.642 kb on - strand at 200.642 kb on - strand at 200.642 kb on - strand at 200.668 kb on + strand at 200.692 kb on + strand at 200.809 kb on + strand, within GFF1348 at 200.810 kb on - strand, within GFF1348 at 200.810 kb on - strand, within GFF1348 at 200.810 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.819 kb on - strand, within GFF1348 at 200.908 kb on + strand, within GFF1348 at 200.908 kb on + strand, within GFF1348 at 200.968 kb on + strand, within GFF1348 at 200.968 kb on + strand, within GFF1348
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 198,140 - -0.7 198,140 - -0.1 198,195 + -0.5 198,195 + -0.0 198,195 + -0.5 198,195 + -0.2 198,195 + -0.8 198,309 + GFF1345 0.21 -0.3 198,309 + GFF1345 0.21 +0.1 198,423 + GFF1345 0.34 -0.9 198,424 - GFF1345 0.34 -0.7 198,424 - GFF1345 0.34 +0.2 198,483 + GFF1345 0.41 +0.0 198,483 + GFF1345 0.41 +0.3 198,483 + GFF1345 0.41 -0.5 198,483 + GFF1345 0.41 -0.1 198,483 + GFF1345 0.41 -1.4 198,484 - GFF1345 0.41 -0.5 198,504 + GFF1345 0.43 -0.6 198,504 + GFF1345 0.43 -0.2 198,609 + GFF1345 0.55 -0.1 198,610 - GFF1345 0.55 -1.3 198,610 - GFF1345 0.55 -0.7 198,610 - GFF1345 0.55 +0.1 198,639 + GFF1345 0.59 +0.2 198,639 + GFF1345 0.59 -0.1 198,639 + GFF1345 0.59 -0.1 198,717 + GFF1345 0.68 -0.8 198,717 + GFF1345 0.68 -1.3 198,717 + GFF1345 0.68 +0.6 198,718 - GFF1345 0.68 -0.5 199,087 + +0.6 199,088 - -0.3 199,208 - GFF1346 0.20 -1.5 199,208 - GFF1346 0.20 -0.3 199,333 + GFF1346 0.32 +0.5 199,333 + GFF1346 0.32 -0.1 199,333 + GFF1346 0.32 -0.5 199,333 + GFF1346 0.32 -0.8 199,333 + GFF1346 0.32 -0.0 199,333 + GFF1346 0.32 -1.2 199,333 + GFF1346 0.32 -0.3 199,334 - GFF1346 0.33 -0.1 199,334 - GFF1346 0.33 +0.0 199,479 - GFF1346 0.47 +0.0 199,480 + GFF1346 0.47 -0.3 199,480 + GFF1346 0.47 +0.3 199,480 + GFF1346 0.47 +0.6 199,480 + GFF1346 0.47 -0.3 199,481 - GFF1346 0.47 -0.2 199,481 - GFF1346 0.47 -0.5 199,481 - GFF1346 0.47 -0.1 199,483 + GFF1346 0.48 +0.5 199,483 + GFF1346 0.48 -0.3 199,484 - GFF1346 0.48 -0.4 199,484 - GFF1346 0.48 -0.4 199,484 - GFF1346 0.48 -0.9 199,484 - GFF1346 0.48 -0.5 199,484 - GFF1346 0.48 -0.4 199,484 - GFF1346 0.48 -0.6 199,484 - GFF1346 0.48 -0.6 200,066 + +0.1 200,066 + +0.3 200,066 + -0.3 200,066 + -1.7 200,066 + +0.2 200,067 - +0.4 200,067 - -0.0 200,144 + GFF1347 0.22 +0.3 200,144 + GFF1347 0.22 -0.3 200,144 + GFF1347 0.22 -0.0 200,144 + GFF1347 0.22 +0.0 200,144 + GFF1347 0.22 -0.6 200,144 + GFF1347 0.22 +0.1 200,145 - GFF1347 0.22 -0.2 200,145 - GFF1347 0.22 +0.4 200,145 - GFF1347 0.22 -0.9 200,145 - GFF1347 0.22 -3.1 200,145 - GFF1347 0.22 -0.4 200,145 - GFF1347 0.22 +0.2 200,324 + GFF1347 0.51 -0.4 200,324 + GFF1347 0.51 -0.3 200,325 - GFF1347 0.51 -1.3 200,348 + GFF1347 0.54 +0.3 200,349 - GFF1347 0.55 +0.2 200,349 - GFF1347 0.55 +0.8 200,349 - GFF1347 0.55 +0.1 200,349 - GFF1347 0.55 +2.1 200,641 + +0.8 200,641 + +1.0 200,642 - -0.0 200,642 - -0.1 200,642 - -0.1 200,668 + -0.1 200,692 + -0.3 200,809 + GFF1348 0.17 +0.5 200,810 - GFF1348 0.17 +0.4 200,810 - GFF1348 0.17 +0.7 200,810 - GFF1348 0.17 -0.1 200,819 - GFF1348 0.18 +0.0 200,819 - GFF1348 0.18 -0.4 200,819 - GFF1348 0.18 -0.4 200,819 - GFF1348 0.18 -0.0 200,819 - GFF1348 0.18 +0.5 200,908 + GFF1348 0.27 -1.1 200,908 + GFF1348 0.27 +0.8 200,968 + GFF1348 0.33 -0.5 200,968 + GFF1348 0.33 +0.2
Or see this region's nucleotide sequence