Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1219

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
83,185	+				-0.7
83,185	+				-0.7
83,186	-				+0.4
83,186	-				+0.1
83,187	+				+0.3
83,187	+				-0.4
83,187	+				+0.4
83,187	+				-0.5
83,187	+				-0.2
83,187	+				-0.4
83,187	+				+1.5
83,188	-				+0.8
83,188	-				-0.8
83,188	-				-0.1
83,188	-				+0.0
83,188	-				+0.0
83,188	-				+0.1
84,299	+		GFF1219	0.22	+0.0
84,323	+		GFF1219	0.25	-0.6
84,323	+		GFF1219	0.25	+0.5
84,324	-		GFF1219	0.25	+0.4
84,324	-		GFF1219	0.25	-0.2
84,324	-		GFF1219	0.25	-0.1
84,324	-		GFF1219	0.25	-0.0
84,377	+		GFF1219	0.33	+0.6
84,377	+		GFF1219	0.33	-0.9
84,378	-		GFF1219	0.33	-0.0
84,378	-		GFF1219	0.33	+0.2
84,378	-		GFF1219	0.33	-0.3
84,378	-		GFF1219	0.33	+0.0
84,378	-		GFF1219	0.33	-0.4
84,620	+		GFF1219	0.66	-1.4
84,620	+		GFF1219	0.66	-0.8
84,620	+		GFF1219	0.66	-0.7
84,621	-		GFF1219	0.66	-0.5
84,629	+		GFF1219	0.67	-0.4
84,629	+		GFF1219	0.67	-0.4
84,629	+		GFF1219	0.67	-0.2
84,629	+		GFF1219	0.67	-0.8
84,630	-		GFF1219	0.67	-1.1
84,630	-		GFF1219	0.67	+0.7
84,630	-		GFF1219	0.67	-0.6
84,630	-		GFF1219	0.67	-0.2
84,690	-		GFF1219	0.76	+0.1
84,809	+				+0.5
84,809	+				-0.2
84,809	+				-0.2
84,809	+				+0.2
84,810	-				+0.2
84,810	-				-1.0
84,810	-				+0.5