Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1149

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
5,701	-		GFF1149	0.16	+0.4
5,943	+		GFF1149	0.45	+0.4
6,156	+		GFF1149	0.71	-0.7
6,156	+		GFF1149	0.71	+0.1
6,157	-		GFF1149	0.71	+0.4
6,246	+		GFF1149	0.81	+0.7
6,247	-		GFF1149	0.81	+0.5
6,292	-		GFF1149	0.87	+1.3
6,333	+				+1.0
6,333	+				+0.3
6,334	-				+0.0
6,589	+		GFF1150	0.12	+0.2
6,623	-		GFF1150	0.15	+0.1
6,808	+		GFF1150	0.33	+0.1
6,809	-		GFF1150	0.33	+0.1
6,809	-		GFF1150	0.33	+0.1
6,815	-		GFF1150	0.34	-0.3
7,006	+		GFF1150	0.52	-0.5
7,007	-		GFF1150	0.53	-0.7
7,037	-		GFF1150	0.55	-0.1
7,120	+		GFF1150	0.63	-0.2
7,121	-		GFF1150	0.64	-0.4
7,121	-		GFF1150	0.64	-0.2
7,274	-		GFF1150	0.78	-0.1