Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1100

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
21,950	-				-0.3
22,001	+				+0.2
22,001	+				+0.1
22,001	+				-0.2
22,002	-				+0.7
22,073	+				-0.1
22,074	-				+0.2
22,122	+				-0.2
22,133	-				+0.7
22,317	-				+0.8
22,324	+				-0.3
22,479	+				+0.3
22,480	-				+0.1
22,520	+				+0.5
22,520	+				+0.2
22,521	-				-0.8
22,574	+				-0.2
22,637	-				-0.4
22,786	+				+0.6
22,789	-				+0.5
22,964	-				+2.4
23,004	-				-0.9
23,081	+				-0.6
23,147	+				-0.1
23,147	+				+0.6
23,147	+				-0.5
23,148	-				-0.5
23,212	+		GFF1100	0.12	-0.0
23,213	-		GFF1100	0.12	-0.1
23,213	-		GFF1100	0.12	+0.1
23,420	-		GFF1100	0.21	-0.0
23,420	-		GFF1100	0.21	+0.1
23,487	+		GFF1100	0.24	+0.6
23,488	-		GFF1100	0.24	-0.5
23,489	+		GFF1100	0.24	+1.5
23,489	+		GFF1100	0.24	-0.2
23,490	-		GFF1100	0.24	-0.4
23,522	+		GFF1100	0.25	-1.0
23,689	+		GFF1100	0.32	-0.1
23,689	+		GFF1100	0.32	-1.3
23,690	-		GFF1100	0.33	+0.3
24,128	-		GFF1100	0.51	+0.2
24,255	-		GFF1100	0.56	-0.2
24,255	-		GFF1100	0.56	-0.3
24,475	+		GFF1100	0.66	+0.3
24,686	+		GFF1100	0.75	+0.5
24,686	+		GFF1100	0.75	+0.1
24,687	-		GFF1100	0.75	+0.6
24,687	-		GFF1100	0.75	+0.0
24,804	-		GFF1100	0.80	-0.1
24,804	-		GFF1100	0.80	+0.2
24,853	+		GFF1100	0.82	+0.2
24,854	-		GFF1100	0.82	+0.3
24,880	+		GFF1100	0.83	-0.0
24,881	-		GFF1100	0.83	+1.2
25,091	-				+0.1
25,091	-				-0.5
25,278	+				+0.4
25,365	+				+0.1
25,368	+				+0.1
25,369	-				+0.6
25,369	-				+0.0
25,394	+				-1.3
25,714	-				-0.4
25,717	+				+0.2
25,730	+				+0.4
25,730	+				+0.2
25,731	-				+0.5
25,740	+				-0.7
25,741	-				-0.7
25,749	+				+0.6
25,749	+				+0.9
25,803	+				-0.1
25,803	+				+0.8
25,803	+				+0.3
25,804	-				-0.2
25,864	+				+0.5
25,917	-				-0.1
25,956	-				+0.1
25,956	-				+0.0
25,959	+				+0.3
25,959	+				-0.1
25,960	-				+1.8
25,960	-				+0.1
25,960	-				+1.4
25,960	-				-0.2
26,010	+				+0.5
26,011	-				+0.1
26,035	-				-0.3
26,130	+				+0.2
26,139	+				+1.5
26,218	+				+0.1
26,219	-				+0.6
26,240	+				+0.5
26,240	+				+0.9