Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1016 and GFF1017 are separated by 34 nucleotides GFF1017 and GFF1018 are separated by 48 nucleotides
GFF1016 - Benzoate transport, extracellular ligand-binding receptor, at 754,035 to 755,222
GFF1016
GFF1017 - Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-), at 755,257 to 756,291
GFF1017
GFF1018 - Aldehyde dehydrogenase A (EC 1.2.1.22), at 756,340 to 757,806
GFF1018
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1 at 754.283 kb on - strand, within GFF1016 at 754.297 kb on + strand, within GFF1016 at 754.297 kb on + strand, within GFF1016 at 754.297 kb on + strand, within GFF1016 at 754.298 kb on - strand, within GFF1016 at 754.326 kb on + strand, within GFF1016 at 754.326 kb on + strand, within GFF1016 at 754.327 kb on - strand, within GFF1016 at 754.327 kb on - strand, within GFF1016 at 754.330 kb on + strand, within GFF1016 at 754.331 kb on - strand, within GFF1016 at 754.378 kb on + strand, within GFF1016 at 754.493 kb on - strand, within GFF1016 at 754.555 kb on + strand, within GFF1016 at 754.857 kb on - strand, within GFF1016 at 754.936 kb on - strand, within GFF1016 at 755.087 kb on + strand, within GFF1016 at 755.088 kb on - strand, within GFF1016 at 755.342 kb on - strand at 755.489 kb on + strand, within GFF1017 at 755.489 kb on + strand, within GFF1017 at 755.490 kb on - strand, within GFF1017 at 755.490 kb on - strand, within GFF1017 at 755.600 kb on + strand, within GFF1017 at 755.635 kb on + strand, within GFF1017 at 755.727 kb on - strand, within GFF1017 at 755.727 kb on - strand, within GFF1017 at 755.816 kb on + strand, within GFF1017 at 755.817 kb on - strand, within GFF1017 at 755.880 kb on - strand, within GFF1017 at 755.894 kb on + strand, within GFF1017 at 755.895 kb on - strand, within GFF1017 at 755.988 kb on - strand, within GFF1017 at 756.006 kb on - strand, within GFF1017 at 756.006 kb on - strand, within GFF1017 at 756.090 kb on - strand, within GFF1017 at 756.258 kb on + strand at 756.269 kb on + strand at 756.269 kb on + strand at 756.269 kb on + strand at 756.269 kb on + strand at 756.270 kb on - strand at 756.270 kb on - strand at 756.270 kb on - strand at 756.270 kb on - strand at 756.270 kb on - strand at 756.295 kb on + strand at 756.306 kb on + strand at 756.308 kb on + strand at 756.309 kb on - strand at 756.309 kb on - strand at 756.313 kb on - strand at 756.313 kb on - strand at 756.316 kb on - strand at 756.367 kb on + strand at 756.367 kb on + strand at 756.368 kb on - strand at 756.368 kb on - strand at 756.378 kb on - strand at 756.378 kb on - strand at 756.855 kb on + strand, within GFF1018 at 756.856 kb on - strand, within GFF1018
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 754,283 - GFF1016 0.21 +0.1 754,297 + GFF1016 0.22 -0.9 754,297 + GFF1016 0.22 -0.3 754,297 + GFF1016 0.22 +0.0 754,298 - GFF1016 0.22 +0.3 754,326 + GFF1016 0.24 -0.1 754,326 + GFF1016 0.24 +0.5 754,327 - GFF1016 0.25 +0.5 754,327 - GFF1016 0.25 +0.2 754,330 + GFF1016 0.25 +0.0 754,331 - GFF1016 0.25 -2.1 754,378 + GFF1016 0.29 +0.1 754,493 - GFF1016 0.39 -1.7 754,555 + GFF1016 0.44 -0.8 754,857 - GFF1016 0.69 -1.7 754,936 - GFF1016 0.76 +0.3 755,087 + GFF1016 0.89 -0.0 755,088 - GFF1016 0.89 -0.9 755,342 - -0.0 755,489 + GFF1017 0.22 -0.3 755,489 + GFF1017 0.22 -0.2 755,490 - GFF1017 0.23 -0.4 755,490 - GFF1017 0.23 -0.1 755,600 + GFF1017 0.33 -0.0 755,635 + GFF1017 0.37 -1.3 755,727 - GFF1017 0.45 +0.1 755,727 - GFF1017 0.45 -0.1 755,816 + GFF1017 0.54 -0.3 755,817 - GFF1017 0.54 +0.1 755,880 - GFF1017 0.60 -0.0 755,894 + GFF1017 0.62 -0.6 755,895 - GFF1017 0.62 +0.2 755,988 - GFF1017 0.71 -0.6 756,006 - GFF1017 0.72 +0.1 756,006 - GFF1017 0.72 -0.0 756,090 - GFF1017 0.80 +0.7 756,258 + -0.6 756,269 + -1.9 756,269 + -0.5 756,269 + -0.2 756,269 + -0.3 756,270 - +0.4 756,270 - -0.8 756,270 - -0.9 756,270 - +0.2 756,270 - -0.4 756,295 + -0.2 756,306 + +0.1 756,308 + -0.5 756,309 - +0.1 756,309 - -0.3 756,313 - -0.1 756,313 - +0.7 756,316 - +0.2 756,367 + -0.0 756,367 + +0.2 756,368 - +1.1 756,368 - -0.2 756,378 - -0.0 756,378 - -0.1 756,855 + GFF1018 0.35 -0.2 756,856 - GFF1018 0.35 +0.6
Or see this region's nucleotide sequence