Strain Fitness in Escherichia fergusonii Becca around EFB2_03909

Experiment: BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae
4,095,424	-		EFB2_03907	0.49	+0.2
4,095,434	+		EFB2_03907	0.51	+1.0
4,095,434	+		EFB2_03907	0.51	-2.4
4,095,435	-		EFB2_03907	0.51	-3.0
4,095,444	+		EFB2_03907	0.53	+0.9
4,095,445	-		EFB2_03907	0.53	+0.9
4,095,445	-		EFB2_03907	0.53	-0.1
4,095,450	+		EFB2_03907	0.54	+1.8
4,095,450	+		EFB2_03907	0.54	+0.6
4,095,453	+		EFB2_03907	0.54	+0.2
4,095,453	+		EFB2_03907	0.54	+0.1
4,095,454	-		EFB2_03907	0.54	-1.0
4,095,531	+		EFB2_03907	0.67	-0.8
4,095,531	+		EFB2_03907	0.67	+0.2
4,095,531	+		EFB2_03907	0.67	-0.2
4,095,531	+		EFB2_03907	0.67	+0.4
4,095,531	+		EFB2_03907	0.67	+0.2
4,095,531	+		EFB2_03907	0.67	+1.2
4,095,531	+		EFB2_03907	0.67	+0.4
4,095,531	+		EFB2_03907	0.67	-0.7
4,095,532	-		EFB2_03907	0.67	+0.1
4,095,532	-		EFB2_03907	0.67	+0.7
4,095,532	-		EFB2_03907	0.67	+0.3
4,095,532	-		EFB2_03907	0.67	+1.2
4,095,532	-		EFB2_03907	0.67	-1.1
4,095,532	-		EFB2_03907	0.67	-0.4
4,095,532	-		EFB2_03907	0.67	+0.2
4,095,532	-		EFB2_03907	0.67	-1.2
4,095,532	-		EFB2_03907	0.67	+0.4
4,095,540	+		EFB2_03907	0.68	-1.0
4,095,540	+		EFB2_03907	0.68	+0.6
4,095,553	-		EFB2_03907	0.70	+0.6
4,095,594	+		EFB2_03907	0.77	+1.3
4,095,595	-		EFB2_03907	0.77	-0.6
4,095,595	-		EFB2_03907	0.77	-0.4
4,095,595	-		EFB2_03907	0.77	-0.6
4,095,600	+		EFB2_03907	0.78	-0.8
4,095,601	-		EFB2_03907	0.78	+0.4
4,095,601	-		EFB2_03907	0.78	+0.1
4,095,601	-		EFB2_03907	0.78	-1.1
4,095,724	+				-1.6
4,095,724	+				+0.7
4,095,724	+				-2.0
4,095,724	+				+0.0
4,095,724	+				-2.0
4,095,725	-				+1.5
4,095,725	-				-0.9
4,095,725	-				-0.4
4,095,725	-				-1.3
4,095,725	-				-0.6
4,095,725	-				-1.4
4,095,725	-				-2.8
4,095,725	-				+1.6
4,095,725	-				-0.3
4,095,726	+				+0.1
4,095,727	-				+0.0
4,095,727	-				-2.4
4,095,730	+				-2.3
4,095,730	+				+1.7
4,095,730	+				-0.1
4,095,730	+				+2.1
4,095,731	-				-1.6
4,095,754	+				-2.0
4,095,755	-				-1.8
4,095,755	-				+0.5
4,095,755	-				-1.5
4,095,758	+				+0.8
4,095,759	-				-0.5
4,095,777	-				-0.5
4,095,814	+				-1.1
4,095,878	+		EFB2_03908	0.20	+2.0
4,095,922	+		EFB2_03908	0.27	+0.5
4,095,998	+		EFB2_03908	0.40	+0.3
4,095,998	+		EFB2_03908	0.40	-0.3
4,096,002	-		EFB2_03908	0.41	+1.6
4,096,002	-		EFB2_03908	0.41	-0.3
4,096,002	-		EFB2_03908	0.41	+1.0
4,096,002	-		EFB2_03908	0.41	-2.9
4,096,006	+		EFB2_03908	0.41	+0.6
4,096,043	-		EFB2_03908	0.48	+0.6
4,096,051	+		EFB2_03908	0.49	-0.9
4,096,051	+		EFB2_03908	0.49	+0.9
4,096,051	+		EFB2_03908	0.49	+0.2
4,096,074	-		EFB2_03908	0.53	+1.1
4,096,147	+		EFB2_03908	0.65	-2.7
4,096,152	-		EFB2_03908	0.66	-0.4
4,096,153	+		EFB2_03908	0.66	-2.6
4,096,154	-		EFB2_03908	0.66	-0.8
4,096,154	-		EFB2_03908	0.66	-0.7
4,096,178	+		EFB2_03908	0.70	-0.2
4,096,178	+		EFB2_03908	0.70	+0.9
4,096,178	+		EFB2_03908	0.70	-0.1
4,096,179	-		EFB2_03908	0.70	-0.7
4,096,206	-		EFB2_03908	0.75	+1.0
4,096,247	+		EFB2_03908	0.82	-0.5
4,096,248	-		EFB2_03908	0.82	+0.5
4,096,248	-		EFB2_03908	0.82	+0.6
4,096,248	-		EFB2_03908	0.82	-0.6
4,096,322	-				+0.5
4,096,322	-				+0.8
4,096,322	-				-0.7
4,096,333	+				-0.8
4,096,340	+				-1.3
4,096,344	+				+1.3
4,096,344	+				-1.1
4,096,378	-				+0.5
4,096,412	+				+1.2
4,096,423	+				+0.1
4,096,456	+				+1.7
4,096,456	+				-1.2
4,096,457	-				-2.3
4,096,457	-				+0.9
4,096,458	+				-0.6
4,096,458	+				-0.2
4,096,459	-				+0.7
4,096,459	-				+0.3
4,096,459	-				-0.2
4,096,459	-				-0.1
4,096,493	-				+1.1
4,096,506	+				-2.2
4,096,511	-				-0.6
4,096,554	+		EFB2_03909	0.12	-0.9
4,096,554	+		EFB2_03909	0.12	+0.0
4,096,554	+		EFB2_03909	0.12	+2.2
4,096,555	-		EFB2_03909	0.12	+0.2
4,096,604	+		EFB2_03909	0.16	-0.6
4,096,612	+		EFB2_03909	0.16	+0.1
4,096,698	+		EFB2_03909	0.23	-3.5
4,096,698	+		EFB2_03909	0.23	-1.8
4,096,698	+		EFB2_03909	0.23	+0.6
4,096,699	-		EFB2_03909	0.23	-1.0
4,096,711	-		EFB2_03909	0.24	-0.5
4,096,734	+		EFB2_03909	0.26	-0.5
4,096,768	+		EFB2_03909	0.29	-0.4
4,096,788	+		EFB2_03909	0.30	+0.6
4,096,811	-		EFB2_03909	0.32	+0.7
4,096,814	-		EFB2_03909	0.32	-2.4
4,096,814	-		EFB2_03909	0.32	-1.3
4,096,846	+		EFB2_03909	0.35	+1.8
4,096,846	+		EFB2_03909	0.35	-0.2
4,096,846	+		EFB2_03909	0.35	+0.1
4,096,846	+		EFB2_03909	0.35	+1.8
4,096,847	-		EFB2_03909	0.35	+0.9
4,096,847	-		EFB2_03909	0.35	-3.2
4,096,847	-		EFB2_03909	0.35	+0.7
4,096,848	+		EFB2_03909	0.35	-0.9
4,096,848	+		EFB2_03909	0.35	-1.2
4,096,848	+		EFB2_03909	0.35	-3.8
4,096,848	+		EFB2_03909	0.35	+1.4
4,096,848	+		EFB2_03909	0.35	-1.1
4,096,849	-		EFB2_03909	0.35	+0.6
4,096,849	-		EFB2_03909	0.35	+0.3
4,096,849	-		EFB2_03909	0.35	-0.2
4,096,849	-		EFB2_03909	0.35	+1.4
4,096,849	-		EFB2_03909	0.35	+0.9
4,096,852	+		EFB2_03909	0.35	-1.8
4,096,852	+		EFB2_03909	0.35	-1.1
4,096,852	+		EFB2_03909	0.35	-2.5
4,096,852	+		EFB2_03909	0.35	-0.8
4,096,852	+		EFB2_03909	0.35	-0.1
4,096,853	-		EFB2_03909	0.35	-0.1
4,096,853	-		EFB2_03909	0.35	-1.9
4,096,854	+		EFB2_03909	0.35	+1.1
4,096,854	+		EFB2_03909	0.35	-1.8
4,096,854	+		EFB2_03909	0.35	-1.0
4,096,855	-		EFB2_03909	0.36	+0.8
4,096,855	-		EFB2_03909	0.36	-1.6
4,096,855	-		EFB2_03909	0.36	-1.1
4,096,879	+		EFB2_03909	0.37	+3.2
4,096,879	+		EFB2_03909	0.37	-1.2
4,096,879	+		EFB2_03909	0.37	-1.1
4,096,879	+		EFB2_03909	0.37	+0.1
4,096,880	-		EFB2_03909	0.38	+1.1
4,096,880	-		EFB2_03909	0.38	+0.8
4,096,880	-		EFB2_03909	0.38	+0.9
4,096,880	-		EFB2_03909	0.38	-0.4
4,096,880	-		EFB2_03909	0.38	-0.1
4,096,880	-		EFB2_03909	0.38	-1.4
4,096,880	-		EFB2_03909	0.38	-1.5
4,096,893	+		EFB2_03909	0.39	+0.3
4,096,893	+		EFB2_03909	0.39	+0.1
4,096,937	+		EFB2_03909	0.42	-0.6
4,096,939	+		EFB2_03909	0.42	-3.3
4,096,939	+		EFB2_03909	0.42	+2.1
4,097,079	+		EFB2_03909	0.53	+0.7
4,097,080	-		EFB2_03909	0.53	+0.2
4,097,080	-		EFB2_03909	0.53	-1.8
4,097,080	-		EFB2_03909	0.53	-0.0
4,097,080	-		EFB2_03909	0.53	+0.4
4,097,083	+		EFB2_03909	0.54	-0.7
4,097,084	-		EFB2_03909	0.54	-0.4
4,097,090	-		EFB2_03909	0.54	+0.0
4,097,090	-		EFB2_03909	0.54	-1.9
4,097,090	-		EFB2_03909	0.54	+0.7
4,097,104	+		EFB2_03909	0.55	-1.7
4,097,104	+		EFB2_03909	0.55	-0.3
4,097,104	+		EFB2_03909	0.55	-1.6
4,097,104	+		EFB2_03909	0.55	+2.0
4,097,104	+		EFB2_03909	0.55	-0.3
4,097,105	-		EFB2_03909	0.55	-0.6
4,097,121	+		EFB2_03909	0.57	+0.8
4,097,137	+		EFB2_03909	0.58	-1.3
4,097,138	-		EFB2_03909	0.58	+0.6
4,097,151	-		EFB2_03909	0.59	-0.4
4,097,151	-		EFB2_03909	0.59	-0.5
4,097,174	+		EFB2_03909	0.61	-0.5
4,097,175	-		EFB2_03909	0.61	-0.4
4,097,175	-		EFB2_03909	0.61	-2.3
4,097,175	-		EFB2_03909	0.61	-1.1
4,097,187	+		EFB2_03909	0.62	+0.6
4,097,208	+		EFB2_03909	0.63	-0.2
4,097,208	+		EFB2_03909	0.63	+1.3
4,097,223	-		EFB2_03909	0.65	+1.4
4,097,238	+		EFB2_03909	0.66	+0.3
4,097,251	+		EFB2_03909	0.67	-1.2
4,097,252	-		EFB2_03909	0.67	-2.2
4,097,252	-		EFB2_03909	0.67	-0.3
4,097,252	-		EFB2_03909	0.67	+0.7
4,097,252	-		EFB2_03909	0.67	+0.4
4,097,252	-		EFB2_03909	0.67	-0.6
4,097,253	+		EFB2_03909	0.67	-1.5
4,097,254	-		EFB2_03909	0.67	+0.8
4,097,316	+		EFB2_03909	0.72	+0.5
4,097,316	+		EFB2_03909	0.72	-0.2
4,097,317	-		EFB2_03909	0.72	+0.9
4,097,317	-		EFB2_03909	0.72	+0.9
4,097,317	-		EFB2_03909	0.72	+0.5
4,097,332	-		EFB2_03909	0.73	-0.7
4,097,332	-		EFB2_03909	0.73	-1.1
4,097,332	-		EFB2_03909	0.73	-1.5
4,097,332	-		EFB2_03909	0.73	-1.0
4,097,333	+		EFB2_03909	0.73	+0.8
4,097,333	+		EFB2_03909	0.73	+0.2
4,097,333	+		EFB2_03909	0.73	+1.2
4,097,334	-		EFB2_03909	0.73	+0.4
4,097,334	-		EFB2_03909	0.73	+1.2
4,097,334	-		EFB2_03909	0.73	-0.4
4,097,369	+		EFB2_03909	0.76	+0.1
4,097,369	+		EFB2_03909	0.76	-2.6
4,097,369	+		EFB2_03909	0.76	+0.3
4,097,369	+		EFB2_03909	0.76	+0.0
4,097,369	+		EFB2_03909	0.76	-1.0
4,097,370	-		EFB2_03909	0.76	+1.0
4,097,370	-		EFB2_03909	0.76	-2.6
4,097,370	-		EFB2_03909	0.76	-0.9
4,097,429	+		EFB2_03909	0.81	+0.4
4,097,454	+		EFB2_03909	0.83	-1.5
4,097,455	-		EFB2_03909	0.83	-0.3
4,097,472	-		EFB2_03909	0.84	+2.3
4,097,496	+		EFB2_03909	0.86	-0.3
4,097,496	+		EFB2_03909	0.86	+0.4
4,097,496	+		EFB2_03909	0.86	+0.2
4,097,496	+		EFB2_03909	0.86	-1.7
4,097,496	+		EFB2_03909	0.86	+0.4
4,097,496	+		EFB2_03909	0.86	-2.6
4,097,496	+		EFB2_03909	0.86	-0.2
4,097,497	-		EFB2_03909	0.86	+0.8
4,097,497	-		EFB2_03909	0.86	+1.2
4,097,500	+		EFB2_03909	0.86	-2.1
4,097,500	+		EFB2_03909	0.86	-1.6
4,097,500	+		EFB2_03909	0.86	-0.3
4,097,500	+		EFB2_03909	0.86	-0.0
4,097,501	-		EFB2_03909	0.87	+0.9
4,097,501	-		EFB2_03909	0.87	-0.2
4,097,501	-		EFB2_03909	0.87	+0.9
4,097,501	-		EFB2_03909	0.87	-0.9
4,097,501	-		EFB2_03909	0.87	-0.2
4,097,502	+		EFB2_03909	0.87	-0.0
4,097,502	+		EFB2_03909	0.87	+0.4
4,097,502	+		EFB2_03909	0.87	+0.2
4,097,509	+		EFB2_03909	0.87	+0.7
4,097,510	-		EFB2_03909	0.87	-0.7
4,097,510	-		EFB2_03909	0.87	-2.8
4,097,529	+		EFB2_03909	0.89	-0.9
4,097,530	-		EFB2_03909	0.89	-0.7
4,097,530	-		EFB2_03909	0.89	-0.7
4,097,530	-		EFB2_03909	0.89	-2.4
4,097,589	+				-0.3
4,097,589	+				-1.8
4,097,589	+				-0.5
4,097,589	+				+1.0
4,097,589	+				-0.7
4,097,589	+				-1.4
4,097,589	+				+0.4
4,097,590	-				-2.5
4,097,590	-				+1.6
4,097,590	-				-0.5
4,097,590	-				-0.7
4,097,590	-				+0.1
4,097,590	-				+0.8
4,097,594	+				+0.8
4,097,594	+				-0.5
4,097,594	+				+0.9
4,097,595	-				-2.4
4,097,595	-				-0.9
4,097,607	+				+1.1
4,097,608	-				+0.0
4,097,608	-				-2.1
4,097,610	+				-1.4
4,097,610	+				-0.6
4,097,610	+				+0.8
4,097,610	+				-2.1
4,097,610	+				-0.6
4,097,611	-				+0.1
4,097,611	-				+0.7
4,097,611	-				+0.1
4,097,611	-				-1.3
4,097,611	-				-0.4
4,097,611	-				-0.2
4,097,611	-				-0.3
4,097,611	-				-1.4
4,097,611	-				-1.5
4,097,611	-				-3.4
4,097,616	+				-0.6
4,097,616	+				+0.1
4,097,617	-				-1.3
4,097,617	-				-2.4
4,097,617	-				+0.5
4,097,618	+				+0.7
4,097,618	+				-0.9
4,097,618	+				+0.6
4,097,618	+				-0.9
4,097,618	+				-1.1
4,097,618	+				-0.2
4,097,618	+				-0.4
4,097,618	+				-1.8
4,097,618	+				-0.4
4,097,618	+				-2.3
4,097,618	+				-0.5
4,097,619	-				-0.6
4,097,619	-				+0.9
4,097,619	-				+1.3
4,097,619	-				-2.7
4,097,635	-				-0.4
4,097,658	+				-0.0
4,097,659	-				+0.3
4,097,662	+				-0.2
4,097,662	+				+0.1
4,097,662	+				-0.1
4,097,662	+				-0.1
4,097,662	+				-1.7
4,097,662	+				-1.4
4,097,663	-				+0.3
4,097,663	-				+1.2
4,097,663	-				-0.3
4,097,663	-				+0.7
4,097,663	-				-0.4
4,097,671	+				+0.2
4,097,671	+				+0.5
4,097,672	-				+0.2
4,097,677	+				-0.2
4,097,677	+				+0.8
4,097,677	+				-0.5
4,097,677	+				+1.6
4,097,677	+				-0.5
4,097,677	+				-0.8
4,097,678	-				-2.4
4,097,678	-				-2.2
4,097,678	-				+0.6
4,097,678	-				+0.7
4,097,678	-				-2.3
4,097,678	-				-0.1
4,097,712	+				-0.6
4,097,742	-				-1.9
4,097,742	-				+1.2
4,097,768	+				+0.9
4,097,769	-				+0.7
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