Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.4 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS14895 and COO64_RS14900 are separated by 314 nucleotides COO64_RS14900 and COO64_RS14905 are separated by 3 nucleotides COO64_RS14905 and COO64_RS14910 are separated by 116 nucleotides
COO64_RS14895: COO64_RS14895 - cystathionine beta-synthase, at 539,067 to 540,443
_RS14895
COO64_RS14900: COO64_RS14900 - SDR family oxidoreductase, at 540,758 to 541,801
_RS14900
COO64_RS14905: COO64_RS14905 - ester cyclase, at 541,805 to 542,224
_RS14905
COO64_RS14910: COO64_RS14910 - LysR family transcriptional regulator, at 542,341 to 543,246
_RS14910
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 539.775 kb on - strand, within COO64_RS14895 at 539.798 kb on - strand, within COO64_RS14895 at 539.915 kb on + strand, within COO64_RS14895 at 539.915 kb on + strand, within COO64_RS14895 at 539.916 kb on - strand, within COO64_RS14895 at 539.916 kb on - strand, within COO64_RS14895 at 539.916 kb on - strand, within COO64_RS14895 at 540.058 kb on + strand, within COO64_RS14895 at 540.058 kb on + strand, within COO64_RS14895 at 540.058 kb on + strand, within COO64_RS14895 at 540.061 kb on + strand, within COO64_RS14895 at 540.062 kb on - strand, within COO64_RS14895 at 540.399 kb on - strand at 540.537 kb on + strand at 540.537 kb on + strand at 540.537 kb on + strand at 540.538 kb on - strand at 540.538 kb on - strand at 540.538 kb on - strand at 540.538 kb on - strand at 540.538 kb on - strand at 540.538 kb on - strand at 540.538 kb on - strand at 540.538 kb on - strand at 540.538 kb on - strand at 540.538 kb on - strand at 540.614 kb on + strand at 540.615 kb on - strand at 540.615 kb on - strand at 540.615 kb on - strand at 540.759 kb on + strand at 540.760 kb on - strand at 540.760 kb on - strand at 540.822 kb on - strand at 540.901 kb on + strand, within COO64_RS14900 at 540.923 kb on + strand, within COO64_RS14900 at 540.976 kb on - strand, within COO64_RS14900 at 541.002 kb on + strand, within COO64_RS14900 at 541.002 kb on + strand, within COO64_RS14900 at 541.002 kb on + strand, within COO64_RS14900 at 541.002 kb on + strand, within COO64_RS14900 at 541.004 kb on + strand, within COO64_RS14900 at 541.005 kb on - strand, within COO64_RS14900 at 541.005 kb on - strand, within COO64_RS14900 at 541.068 kb on - strand, within COO64_RS14900 at 541.107 kb on + strand, within COO64_RS14900 at 541.107 kb on + strand, within COO64_RS14900 at 541.107 kb on + strand, within COO64_RS14900 at 541.108 kb on - strand, within COO64_RS14900 at 541.142 kb on + strand, within COO64_RS14900 at 541.142 kb on + strand, within COO64_RS14900 at 541.142 kb on + strand, within COO64_RS14900 at 541.142 kb on + strand, within COO64_RS14900 at 541.142 kb on + strand, within COO64_RS14900 at 541.142 kb on + strand, within COO64_RS14900 at 541.142 kb on + strand, within COO64_RS14900 at 541.142 kb on + strand, within COO64_RS14900 at 541.143 kb on - strand, within COO64_RS14900 at 541.143 kb on - strand, within COO64_RS14900 at 541.143 kb on - strand, within COO64_RS14900 at 541.143 kb on - strand, within COO64_RS14900 at 541.144 kb on + strand, within COO64_RS14900 at 541.144 kb on + strand, within COO64_RS14900 at 541.144 kb on + strand, within COO64_RS14900 at 541.186 kb on + strand, within COO64_RS14900 at 541.256 kb on + strand, within COO64_RS14900 at 541.256 kb on + strand, within COO64_RS14900 at 541.256 kb on + strand, within COO64_RS14900 at 541.256 kb on + strand, within COO64_RS14900 at 541.257 kb on - strand, within COO64_RS14900 at 541.352 kb on + strand, within COO64_RS14900 at 541.365 kb on + strand, within COO64_RS14900 at 541.365 kb on + strand, within COO64_RS14900 at 541.368 kb on + strand, within COO64_RS14900 at 541.368 kb on + strand, within COO64_RS14900 at 541.368 kb on + strand, within COO64_RS14900 at 541.368 kb on + strand, within COO64_RS14900 at 541.368 kb on + strand, within COO64_RS14900 at 541.369 kb on - strand, within COO64_RS14900 at 541.369 kb on - strand, within COO64_RS14900 at 541.369 kb on - strand, within COO64_RS14900 at 541.369 kb on - strand, within COO64_RS14900 at 541.369 kb on - strand, within COO64_RS14900 at 541.453 kb on + strand, within COO64_RS14900 at 541.453 kb on + strand, within COO64_RS14900 at 541.453 kb on + strand, within COO64_RS14900 at 541.453 kb on + strand, within COO64_RS14900 at 541.453 kb on + strand, within COO64_RS14900 at 541.454 kb on - strand, within COO64_RS14900 at 541.454 kb on - strand, within COO64_RS14900 at 541.454 kb on - strand, within COO64_RS14900 at 541.454 kb on - strand, within COO64_RS14900 at 541.454 kb on - strand, within COO64_RS14900 at 541.454 kb on - strand, within COO64_RS14900 at 541.454 kb on - strand, within COO64_RS14900 at 541.454 kb on - strand, within COO64_RS14900 at 541.454 kb on - strand, within COO64_RS14900 at 541.469 kb on + strand, within COO64_RS14900 at 541.483 kb on - strand, within COO64_RS14900 at 541.483 kb on - strand, within COO64_RS14900 at 541.557 kb on + strand, within COO64_RS14900 at 541.557 kb on + strand, within COO64_RS14900 at 541.557 kb on + strand, within COO64_RS14900 at 541.557 kb on + strand, within COO64_RS14900 at 541.557 kb on + strand, within COO64_RS14900 at 541.557 kb on + strand, within COO64_RS14900 at 541.558 kb on - strand, within COO64_RS14900 at 541.558 kb on - strand, within COO64_RS14900 at 541.558 kb on - strand, within COO64_RS14900 at 541.558 kb on - strand, within COO64_RS14900 at 541.558 kb on - strand, within COO64_RS14900 at 541.558 kb on - strand, within COO64_RS14900 at 541.561 kb on + strand, within COO64_RS14900 at 541.561 kb on + strand, within COO64_RS14900 at 541.582 kb on + strand, within COO64_RS14900 at 541.582 kb on + strand, within COO64_RS14900 at 541.582 kb on + strand, within COO64_RS14900 at 541.583 kb on - strand, within COO64_RS14900 at 541.725 kb on + strand at 541.905 kb on + strand, within COO64_RS14905 at 541.955 kb on + strand, within COO64_RS14905 at 541.985 kb on + strand, within COO64_RS14905 at 541.986 kb on - strand, within COO64_RS14905 at 542.124 kb on + strand, within COO64_RS14905 at 542.162 kb on + strand, within COO64_RS14905 at 542.162 kb on + strand, within COO64_RS14905 at 542.162 kb on + strand, within COO64_RS14905 at 542.163 kb on - strand, within COO64_RS14905 at 542.163 kb on - strand, within COO64_RS14905 at 542.163 kb on - strand, within COO64_RS14905 at 542.218 kb on + strand at 542.219 kb on - strand at 542.259 kb on + strand at 542.259 kb on + strand at 542.259 kb on + strand at 542.259 kb on + strand at 542.259 kb on + strand at 542.259 kb on + strand at 542.260 kb on - strand at 542.260 kb on - strand at 542.260 kb on - strand at 542.261 kb on + strand at 542.261 kb on + strand at 542.261 kb on + strand at 542.261 kb on + strand at 542.262 kb on - strand at 542.262 kb on - strand at 542.262 kb on - strand at 542.262 kb on - strand at 542.262 kb on - strand at 542.262 kb on - strand at 542.300 kb on + strand at 542.340 kb on + strand at 542.341 kb on - strand at 542.378 kb on + strand at 542.442 kb on + strand, within COO64_RS14910 at 542.667 kb on + strand, within COO64_RS14910 at 542.774 kb on + strand, within COO64_RS14910
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.4 X remove 539,775 - COO64_RS14895 0.51 -0.1 539,798 - COO64_RS14895 0.53 +0.7 539,915 + COO64_RS14895 0.62 +0.9 539,915 + COO64_RS14895 0.62 +0.1 539,916 - COO64_RS14895 0.62 -0.3 539,916 - COO64_RS14895 0.62 +1.1 539,916 - COO64_RS14895 0.62 -0.3 540,058 + COO64_RS14895 0.72 -1.4 540,058 + COO64_RS14895 0.72 -1.0 540,058 + COO64_RS14895 0.72 +0.8 540,061 + COO64_RS14895 0.72 -1.0 540,062 - COO64_RS14895 0.72 -1.1 540,399 - +0.2 540,537 + +0.5 540,537 + +0.6 540,537 + -1.1 540,538 - -1.9 540,538 - -0.7 540,538 - -0.7 540,538 - -1.1 540,538 - +0.3 540,538 - -0.4 540,538 - -0.1 540,538 - +0.7 540,538 - -0.7 540,538 - +0.0 540,614 + -0.6 540,615 - -0.3 540,615 - +1.5 540,615 - -0.1 540,759 + +1.1 540,760 - +1.1 540,760 - +0.2 540,822 - -0.7 540,901 + COO64_RS14900 0.14 +0.4 540,923 + COO64_RS14900 0.16 -0.2 540,976 - COO64_RS14900 0.21 -0.1 541,002 + COO64_RS14900 0.23 -0.4 541,002 + COO64_RS14900 0.23 -0.1 541,002 + COO64_RS14900 0.23 +1.5 541,002 + COO64_RS14900 0.23 -0.2 541,004 + COO64_RS14900 0.24 -0.3 541,005 - COO64_RS14900 0.24 +1.0 541,005 - COO64_RS14900 0.24 +0.1 541,068 - COO64_RS14900 0.30 -0.4 541,107 + COO64_RS14900 0.33 -0.7 541,107 + COO64_RS14900 0.33 -0.8 541,107 + COO64_RS14900 0.33 +2.0 541,108 - COO64_RS14900 0.34 +0.3 541,142 + COO64_RS14900 0.37 +0.7 541,142 + COO64_RS14900 0.37 +0.2 541,142 + COO64_RS14900 0.37 -1.8 541,142 + COO64_RS14900 0.37 +0.7 541,142 + COO64_RS14900 0.37 -1.1 541,142 + COO64_RS14900 0.37 -0.4 541,142 + COO64_RS14900 0.37 -0.4 541,142 + COO64_RS14900 0.37 +0.4 541,143 - COO64_RS14900 0.37 +0.0 541,143 - COO64_RS14900 0.37 +0.6 541,143 - COO64_RS14900 0.37 +0.4 541,143 - COO64_RS14900 0.37 -0.9 541,144 + COO64_RS14900 0.37 -1.1 541,144 + COO64_RS14900 0.37 +0.3 541,144 + COO64_RS14900 0.37 +0.3 541,186 + COO64_RS14900 0.41 -0.4 541,256 + COO64_RS14900 0.48 -0.7 541,256 + COO64_RS14900 0.48 +0.7 541,256 + COO64_RS14900 0.48 +0.6 541,256 + COO64_RS14900 0.48 -0.7 541,257 - COO64_RS14900 0.48 -0.5 541,352 + COO64_RS14900 0.57 +0.3 541,365 + COO64_RS14900 0.58 -0.5 541,365 + COO64_RS14900 0.58 +1.3 541,368 + COO64_RS14900 0.58 +0.6 541,368 + COO64_RS14900 0.58 -0.6 541,368 + COO64_RS14900 0.58 +0.1 541,368 + COO64_RS14900 0.58 -0.7 541,368 + COO64_RS14900 0.58 +1.1 541,369 - COO64_RS14900 0.59 +1.1 541,369 - COO64_RS14900 0.59 -0.2 541,369 - COO64_RS14900 0.59 -0.9 541,369 - COO64_RS14900 0.59 +0.6 541,369 - COO64_RS14900 0.59 -0.6 541,453 + COO64_RS14900 0.67 -0.3 541,453 + COO64_RS14900 0.67 +0.2 541,453 + COO64_RS14900 0.67 +0.3 541,453 + COO64_RS14900 0.67 +0.0 541,453 + COO64_RS14900 0.67 +0.1 541,454 - COO64_RS14900 0.67 +0.2 541,454 - COO64_RS14900 0.67 -1.7 541,454 - COO64_RS14900 0.67 -0.9 541,454 - COO64_RS14900 0.67 +0.6 541,454 - COO64_RS14900 0.67 -0.5 541,454 - COO64_RS14900 0.67 -0.9 541,454 - COO64_RS14900 0.67 -0.4 541,454 - COO64_RS14900 0.67 +0.1 541,454 - COO64_RS14900 0.67 +1.1 541,469 + COO64_RS14900 0.68 +0.9 541,483 - COO64_RS14900 0.69 -0.0 541,483 - COO64_RS14900 0.69 +0.2 541,557 + COO64_RS14900 0.77 -0.1 541,557 + COO64_RS14900 0.77 +0.3 541,557 + COO64_RS14900 0.77 +0.3 541,557 + COO64_RS14900 0.77 +0.4 541,557 + COO64_RS14900 0.77 -0.2 541,557 + COO64_RS14900 0.77 -0.7 541,558 - COO64_RS14900 0.77 -0.9 541,558 - COO64_RS14900 0.77 -0.1 541,558 - COO64_RS14900 0.77 +0.2 541,558 - COO64_RS14900 0.77 -0.0 541,558 - COO64_RS14900 0.77 +0.1 541,558 - COO64_RS14900 0.77 +0.1 541,561 + COO64_RS14900 0.77 +0.9 541,561 + COO64_RS14900 0.77 -0.1 541,582 + COO64_RS14900 0.79 -0.2 541,582 + COO64_RS14900 0.79 +0.4 541,582 + COO64_RS14900 0.79 -0.8 541,583 - COO64_RS14900 0.79 -0.2 541,725 + -0.6 541,905 + COO64_RS14905 0.24 -1.6 541,955 + COO64_RS14905 0.36 +0.7 541,985 + COO64_RS14905 0.43 -0.1 541,986 - COO64_RS14905 0.43 -0.2 542,124 + COO64_RS14905 0.76 +1.2 542,162 + COO64_RS14905 0.85 +0.4 542,162 + COO64_RS14905 0.85 -1.2 542,162 + COO64_RS14905 0.85 -0.4 542,163 - COO64_RS14905 0.85 +0.1 542,163 - COO64_RS14905 0.85 -0.3 542,163 - COO64_RS14905 0.85 -0.4 542,218 + -0.4 542,219 - -0.9 542,259 + -0.5 542,259 + +1.4 542,259 + +0.6 542,259 + -1.0 542,259 + +1.6 542,259 + -0.2 542,260 - -0.1 542,260 - -0.4 542,260 - -1.2 542,261 + +0.6 542,261 + +0.0 542,261 + -0.7 542,261 + +0.5 542,262 - -0.1 542,262 - -0.1 542,262 - -0.1 542,262 - +0.3 542,262 - -0.2 542,262 - +0.1 542,300 + -1.4 542,340 + +0.9 542,341 - -1.1 542,378 + +0.3 542,442 + COO64_RS14910 0.11 +0.5 542,667 + COO64_RS14910 0.36 -2.2 542,774 + COO64_RS14910 0.48 +1.3
Or see this region's nucleotide sequence