Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05013

Experiment: Xylan from corncob 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05012 and BACOVA_05013 are separated by 123 nucleotidesBACOVA_05013 and BACOVA_05014 are separated by 16 nucleotides BACOVA_05012: BACOVA_05012 - hypothetical protein, at 476,699 to 478,372 _05012 BACOVA_05013: BACOVA_05013 - hypothetical protein, at 478,496 to 480,607 _05013 BACOVA_05014: BACOVA_05014 - hypothetical protein, at 480,624 to 483,887 _05014 Position (kb) 478 479 480 481Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 477.573 kb on - strand, within BACOVA_05012at 477.596 kb on + strand, within BACOVA_05012at 477.596 kb on + strand, within BACOVA_05012at 477.597 kb on - strand, within BACOVA_05012at 477.650 kb on + strand, within BACOVA_05012at 477.755 kb on + strand, within BACOVA_05012at 477.757 kb on + strand, within BACOVA_05012at 477.771 kb on - strand, within BACOVA_05012at 477.771 kb on - strand, within BACOVA_05012at 477.771 kb on - strand, within BACOVA_05012at 477.851 kb on + strand, within BACOVA_05012at 477.858 kb on - strand, within BACOVA_05012at 477.936 kb on + strand, within BACOVA_05012at 477.936 kb on + strand, within BACOVA_05012at 477.936 kb on + strand, within BACOVA_05012at 478.046 kb on + strand, within BACOVA_05012at 478.072 kb on + strand, within BACOVA_05012at 478.076 kb on - strand, within BACOVA_05012at 478.088 kb on + strand, within BACOVA_05012at 478.089 kb on - strand, within BACOVA_05012at 478.153 kb on + strand, within BACOVA_05012at 478.220 kb on + strandat 478.228 kb on + strandat 478.229 kb on - strandat 478.237 kb on + strandat 478.264 kb on + strandat 478.265 kb on - strandat 478.347 kb on - strandat 478.407 kb on - strandat 478.479 kb on - strandat 478.485 kb on - strandat 478.512 kb on + strandat 478.513 kb on - strandat 478.513 kb on - strandat 478.587 kb on + strandat 478.627 kb on - strandat 478.661 kb on + strandat 478.661 kb on + strandat 478.662 kb on - strandat 478.663 kb on + strandat 478.664 kb on - strandat 478.750 kb on + strand, within BACOVA_05013at 478.750 kb on + strand, within BACOVA_05013at 478.751 kb on - strand, within BACOVA_05013at 478.957 kb on - strand, within BACOVA_05013at 478.957 kb on - strand, within BACOVA_05013at 479.017 kb on - strand, within BACOVA_05013at 479.017 kb on - strand, within BACOVA_05013at 479.017 kb on - strand, within BACOVA_05013at 479.059 kb on + strand, within BACOVA_05013at 479.060 kb on - strand, within BACOVA_05013at 479.065 kb on + strand, within BACOVA_05013at 479.081 kb on - strand, within BACOVA_05013at 479.083 kb on + strand, within BACOVA_05013at 479.084 kb on - strand, within BACOVA_05013at 479.173 kb on + strand, within BACOVA_05013at 479.179 kb on + strand, within BACOVA_05013at 479.189 kb on - strand, within BACOVA_05013at 479.228 kb on - strand, within BACOVA_05013at 479.233 kb on - strand, within BACOVA_05013at 479.247 kb on - strand, within BACOVA_05013at 479.304 kb on - strand, within BACOVA_05013at 479.341 kb on + strand, within BACOVA_05013at 479.342 kb on - strand, within BACOVA_05013at 479.353 kb on + strand, within BACOVA_05013at 479.359 kb on + strand, within BACOVA_05013at 479.359 kb on + strand, within BACOVA_05013at 479.359 kb on + strand, within BACOVA_05013at 479.359 kb on + strand, within BACOVA_05013at 479.360 kb on - strand, within BACOVA_05013at 479.360 kb on - strand, within BACOVA_05013at 479.417 kb on + strand, within BACOVA_05013at 479.418 kb on - strand, within BACOVA_05013at 479.467 kb on + strand, within BACOVA_05013at 479.468 kb on - strand, within BACOVA_05013at 479.468 kb on - strand, within BACOVA_05013at 479.505 kb on + strand, within BACOVA_05013at 479.517 kb on - strand, within BACOVA_05013at 479.542 kb on + strand, within BACOVA_05013at 479.546 kb on - strand, within BACOVA_05013at 479.546 kb on - strand, within BACOVA_05013at 479.569 kb on + strand, within BACOVA_05013at 479.576 kb on - strand, within BACOVA_05013at 479.647 kb on + strand, within BACOVA_05013at 479.647 kb on + strand, within BACOVA_05013at 479.655 kb on + strand, within BACOVA_05013at 479.665 kb on + strand, within BACOVA_05013at 479.666 kb on - strand, within BACOVA_05013at 479.670 kb on + strand, within BACOVA_05013at 479.670 kb on + strand, within BACOVA_05013at 479.879 kb on + strand, within BACOVA_05013at 479.882 kb on - strand, within BACOVA_05013at 479.882 kb on - strand, within BACOVA_05013at 479.882 kb on - strand, within BACOVA_05013at 479.911 kb on + strand, within BACOVA_05013at 479.930 kb on + strand, within BACOVA_05013at 479.930 kb on + strand, within BACOVA_05013at 479.930 kb on + strand, within BACOVA_05013at 479.952 kb on - strand, within BACOVA_05013at 479.955 kb on + strand, within BACOVA_05013at 480.008 kb on - strand, within BACOVA_05013at 480.089 kb on - strand, within BACOVA_05013at 480.152 kb on + strand, within BACOVA_05013at 480.152 kb on + strand, within BACOVA_05013at 480.174 kb on + strand, within BACOVA_05013at 480.174 kb on + strand, within BACOVA_05013at 480.175 kb on - strand, within BACOVA_05013at 480.175 kb on - strand, within BACOVA_05013at 480.178 kb on + strand, within BACOVA_05013at 480.178 kb on + strand, within BACOVA_05013at 480.179 kb on - strand, within BACOVA_05013at 480.182 kb on + strand, within BACOVA_05013at 480.183 kb on - strand, within BACOVA_05013at 480.184 kb on + strand, within BACOVA_05013at 480.185 kb on - strand, within BACOVA_05013at 480.198 kb on - strand, within BACOVA_05013at 480.219 kb on + strand, within BACOVA_05013at 480.220 kb on - strand, within BACOVA_05013at 480.250 kb on + strand, within BACOVA_05013at 480.269 kb on + strand, within BACOVA_05013at 480.270 kb on - strand, within BACOVA_05013at 480.270 kb on - strand, within BACOVA_05013at 480.280 kb on + strand, within BACOVA_05013at 480.422 kb on + strandat 480.443 kb on + strandat 480.443 kb on + strandat 480.467 kb on + strandat 480.467 kb on + strandat 480.467 kb on + strandat 480.468 kb on - strandat 480.533 kb on - strandat 480.541 kb on + strandat 480.606 kb on - strandat 480.704 kb on - strandat 480.833 kb on + strandat 480.834 kb on - strandat 480.859 kb on - strandat 480.916 kb on - strandat 480.938 kb on + strandat 480.940 kb on + strandat 480.941 kb on - strandat 481.028 kb on + strand, within BACOVA_05014at 481.033 kb on - strand, within BACOVA_05014at 481.074 kb on - strand, within BACOVA_05014at 481.091 kb on - strand, within BACOVA_05014at 481.109 kb on + strand, within BACOVA_05014at 481.134 kb on - strand, within BACOVA_05014at 481.140 kb on - strand, within BACOVA_05014at 481.150 kb on + strand, within BACOVA_05014at 481.150 kb on + strand, within BACOVA_05014at 481.151 kb on - strand, within BACOVA_05014at 481.151 kb on - strand, within BACOVA_05014at 481.176 kb on - strand, within BACOVA_05014at 481.196 kb on + strand, within BACOVA_05014at 481.292 kb on - strand, within BACOVA_05014at 481.292 kb on - strand, within BACOVA_05014at 481.292 kb on - strand, within BACOVA_05014at 481.292 kb on - strand, within BACOVA_05014at 481.293 kb on + strand, within BACOVA_05014at 481.293 kb on + strand, within BACOVA_05014at 481.294 kb on - strand, within BACOVA_05014at 481.294 kb on - strand, within BACOVA_05014at 481.300 kb on + strand, within BACOVA_05014at 481.390 kb on + strand, within BACOVA_05014at 481.407 kb on + strand, within BACOVA_05014at 481.407 kb on + strand, within BACOVA_05014at 481.484 kb on + strand, within BACOVA_05014at 481.505 kb on - strand, within BACOVA_05014at 481.527 kb on - strand, within BACOVA_05014at 481.541 kb on - strand, within BACOVA_05014at 481.578 kb on + strand, within BACOVA_05014at 481.578 kb on + strand, within BACOVA_05014at 481.578 kb on + strand, within BACOVA_05014

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C)
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477,573 - BACOVA_05012 0.52 -0.7
477,596 + BACOVA_05012 0.54 -0.0
477,596 + BACOVA_05012 0.54 -0.2
477,597 - BACOVA_05012 0.54 -0.1
477,650 + BACOVA_05012 0.57 +1.0
477,755 + BACOVA_05012 0.63 -1.5
477,757 + BACOVA_05012 0.63 -0.1
477,771 - BACOVA_05012 0.64 +0.2
477,771 - BACOVA_05012 0.64 +1.2
477,771 - BACOVA_05012 0.64 -0.5
477,851 + BACOVA_05012 0.69 +0.3
477,858 - BACOVA_05012 0.69 -0.2
477,936 + BACOVA_05012 0.74 -1.4
477,936 + BACOVA_05012 0.74 -0.1
477,936 + BACOVA_05012 0.74 +0.3
478,046 + BACOVA_05012 0.80 -0.8
478,072 + BACOVA_05012 0.82 -0.5
478,076 - BACOVA_05012 0.82 +0.2
478,088 + BACOVA_05012 0.83 -0.3
478,089 - BACOVA_05012 0.83 +0.2
478,153 + BACOVA_05012 0.87 -0.3
478,220 + +0.8
478,228 + -1.1
478,229 - +0.1
478,237 + +0.5
478,264 + -0.7
478,265 - -0.0
478,347 - -0.8
478,407 - -1.2
478,479 - +0.6
478,485 - +0.2
478,512 + +1.5
478,513 - +0.1
478,513 - -0.1
478,587 + +1.0
478,627 - +0.4
478,661 + -0.5
478,661 + +0.6
478,662 - -0.8
478,663 + +0.5
478,664 - -0.1
478,750 + BACOVA_05013 0.12 -1.4
478,750 + BACOVA_05013 0.12 +1.0
478,751 - BACOVA_05013 0.12 -1.3
478,957 - BACOVA_05013 0.22 -0.1
478,957 - BACOVA_05013 0.22 -0.7
479,017 - BACOVA_05013 0.25 +0.6
479,017 - BACOVA_05013 0.25 -0.1
479,017 - BACOVA_05013 0.25 +1.1
479,059 + BACOVA_05013 0.27 -0.7
479,060 - BACOVA_05013 0.27 +0.3
479,065 + BACOVA_05013 0.27 +0.7
479,081 - BACOVA_05013 0.28 +0.4
479,083 + BACOVA_05013 0.28 +0.2
479,084 - BACOVA_05013 0.28 -0.2
479,173 + BACOVA_05013 0.32 -1.4
479,179 + BACOVA_05013 0.32 +0.7
479,189 - BACOVA_05013 0.33 +0.1
479,228 - BACOVA_05013 0.35 +0.9
479,233 - BACOVA_05013 0.35 -0.9
479,247 - BACOVA_05013 0.36 -0.8
479,304 - BACOVA_05013 0.38 -1.1
479,341 + BACOVA_05013 0.40 -1.8
479,342 - BACOVA_05013 0.40 -1.4
479,353 + BACOVA_05013 0.41 -0.5
479,359 + BACOVA_05013 0.41 +1.0
479,359 + BACOVA_05013 0.41 +0.4
479,359 + BACOVA_05013 0.41 -1.0
479,359 + BACOVA_05013 0.41 -0.9
479,360 - BACOVA_05013 0.41 -0.7
479,360 - BACOVA_05013 0.41 +0.8
479,417 + BACOVA_05013 0.44 +0.3
479,418 - BACOVA_05013 0.44 +1.2
479,467 + BACOVA_05013 0.46 -0.2
479,468 - BACOVA_05013 0.46 +0.9
479,468 - BACOVA_05013 0.46 -1.5
479,505 + BACOVA_05013 0.48 +0.5
479,517 - BACOVA_05013 0.48 -0.6
479,542 + BACOVA_05013 0.50 +0.5
479,546 - BACOVA_05013 0.50 +0.1
479,546 - BACOVA_05013 0.50 +0.6
479,569 + BACOVA_05013 0.51 -0.2
479,576 - BACOVA_05013 0.51 -0.2
479,647 + BACOVA_05013 0.54 +0.2
479,647 + BACOVA_05013 0.54 -0.7
479,655 + BACOVA_05013 0.55 -0.1
479,665 + BACOVA_05013 0.55 +1.1
479,666 - BACOVA_05013 0.55 -1.2
479,670 + BACOVA_05013 0.56 -0.8
479,670 + BACOVA_05013 0.56 +0.1
479,879 + BACOVA_05013 0.65 -0.1
479,882 - BACOVA_05013 0.66 -1.4
479,882 - BACOVA_05013 0.66 -0.2
479,882 - BACOVA_05013 0.66 -0.0
479,911 + BACOVA_05013 0.67 +1.0
479,930 + BACOVA_05013 0.68 +0.3
479,930 + BACOVA_05013 0.68 +0.5
479,930 + BACOVA_05013 0.68 -0.9
479,952 - BACOVA_05013 0.69 -0.1
479,955 + BACOVA_05013 0.69 +0.4
480,008 - BACOVA_05013 0.72 -0.2
480,089 - BACOVA_05013 0.75 +0.5
480,152 + BACOVA_05013 0.78 +0.2
480,152 + BACOVA_05013 0.78 +0.5
480,174 + BACOVA_05013 0.79 -0.1
480,174 + BACOVA_05013 0.79 +1.1
480,175 - BACOVA_05013 0.79 +0.0
480,175 - BACOVA_05013 0.79 -0.6
480,178 + BACOVA_05013 0.80 +1.7
480,178 + BACOVA_05013 0.80 +0.9
480,179 - BACOVA_05013 0.80 -0.3
480,182 + BACOVA_05013 0.80 -1.0
480,183 - BACOVA_05013 0.80 -0.1
480,184 + BACOVA_05013 0.80 +0.0
480,185 - BACOVA_05013 0.80 -0.8
480,198 - BACOVA_05013 0.81 -0.5
480,219 + BACOVA_05013 0.82 -0.0
480,220 - BACOVA_05013 0.82 -1.0
480,250 + BACOVA_05013 0.83 -0.5
480,269 + BACOVA_05013 0.84 -0.3
480,270 - BACOVA_05013 0.84 -0.9
480,270 - BACOVA_05013 0.84 -0.8
480,280 + BACOVA_05013 0.84 +0.1
480,422 + -0.5
480,443 + -1.0
480,443 + +1.0
480,467 + -0.1
480,467 + -0.1
480,467 + -0.5
480,468 - -1.5
480,533 - +0.5
480,541 + -1.0
480,606 - +0.3
480,704 - +2.2
480,833 + +0.1
480,834 - +1.6
480,859 - -0.1
480,916 - +0.9
480,938 + +0.6
480,940 + +0.1
480,941 - -0.5
481,028 + BACOVA_05014 0.12 -1.1
481,033 - BACOVA_05014 0.13 -0.4
481,074 - BACOVA_05014 0.14 -1.1
481,091 - BACOVA_05014 0.14 -0.7
481,109 + BACOVA_05014 0.15 -0.0
481,134 - BACOVA_05014 0.16 -1.0
481,140 - BACOVA_05014 0.16 +0.8
481,150 + BACOVA_05014 0.16 +0.2
481,150 + BACOVA_05014 0.16 -0.7
481,151 - BACOVA_05014 0.16 -0.5
481,151 - BACOVA_05014 0.16 +0.8
481,176 - BACOVA_05014 0.17 -0.3
481,196 + BACOVA_05014 0.18 -0.5
481,292 - BACOVA_05014 0.20 -2.8
481,292 - BACOVA_05014 0.20 -0.0
481,292 - BACOVA_05014 0.20 +0.1
481,292 - BACOVA_05014 0.20 +0.8
481,293 + BACOVA_05014 0.20 -0.0
481,293 + BACOVA_05014 0.20 +1.4
481,294 - BACOVA_05014 0.21 +0.8
481,294 - BACOVA_05014 0.21 -0.5
481,300 + BACOVA_05014 0.21 +0.1
481,390 + BACOVA_05014 0.23 -0.4
481,407 + BACOVA_05014 0.24 +0.3
481,407 + BACOVA_05014 0.24 -0.0
481,484 + BACOVA_05014 0.26 +0.3
481,505 - BACOVA_05014 0.27 -0.7
481,527 - BACOVA_05014 0.28 -0.1
481,541 - BACOVA_05014 0.28 +0.1
481,578 + BACOVA_05014 0.29 -0.7
481,578 + BACOVA_05014 0.29 +0.2
481,578 + BACOVA_05014 0.29 -0.0

Or see this region's nucleotide sequence