Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03139

Experiment: Xylan from corncob 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03137 and BACOVA_03138 overlap by 20 nucleotidesBACOVA_03138 and BACOVA_03139 are separated by 16 nucleotidesBACOVA_03139 and BACOVA_03140 overlap by 4 nucleotides BACOVA_03137: BACOVA_03137 - membrane protein, at 229,012 to 229,974 _03137 BACOVA_03138: BACOVA_03138 - hypothetical protein, at 229,955 to 230,893 _03138 BACOVA_03139: BACOVA_03139 - hypothetical protein, at 230,910 to 231,527 _03139 BACOVA_03140: BACOVA_03140 - hypothetical protein, at 231,524 to 232,795 _03140 Position (kb) 230 231 232Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 229.914 kb on + strandat 229.915 kb on - strandat 229.915 kb on - strandat 229.915 kb on - strandat 229.920 kb on - strandat 229.925 kb on - strandat 229.925 kb on - strandat 229.934 kb on - strandat 229.986 kb on - strandat 230.079 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.086 kb on + strand, within BACOVA_03138at 230.088 kb on + strand, within BACOVA_03138at 230.089 kb on - strand, within BACOVA_03138at 230.094 kb on + strand, within BACOVA_03138at 230.108 kb on - strand, within BACOVA_03138at 230.114 kb on - strand, within BACOVA_03138at 230.143 kb on + strand, within BACOVA_03138at 230.170 kb on - strand, within BACOVA_03138at 230.185 kb on - strand, within BACOVA_03138at 230.226 kb on + strand, within BACOVA_03138at 230.227 kb on - strand, within BACOVA_03138at 230.227 kb on - strand, within BACOVA_03138at 230.238 kb on + strand, within BACOVA_03138at 230.238 kb on + strand, within BACOVA_03138at 230.239 kb on - strand, within BACOVA_03138at 230.291 kb on + strand, within BACOVA_03138at 230.292 kb on - strand, within BACOVA_03138at 230.337 kb on + strand, within BACOVA_03138at 230.337 kb on + strand, within BACOVA_03138at 230.431 kb on - strand, within BACOVA_03138at 230.489 kb on - strand, within BACOVA_03138at 230.493 kb on + strand, within BACOVA_03138at 230.494 kb on - strand, within BACOVA_03138at 230.503 kb on - strand, within BACOVA_03138at 230.505 kb on + strand, within BACOVA_03138at 230.506 kb on - strand, within BACOVA_03138at 230.506 kb on - strand, within BACOVA_03138at 230.519 kb on + strand, within BACOVA_03138at 230.524 kb on - strand, within BACOVA_03138at 230.607 kb on + strand, within BACOVA_03138at 230.635 kb on - strand, within BACOVA_03138at 230.668 kb on - strand, within BACOVA_03138at 230.668 kb on - strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.672 kb on + strand, within BACOVA_03138at 230.692 kb on + strand, within BACOVA_03138at 230.693 kb on - strand, within BACOVA_03138at 230.695 kb on + strand, within BACOVA_03138at 230.695 kb on + strand, within BACOVA_03138at 230.747 kb on + strand, within BACOVA_03138at 230.747 kb on + strand, within BACOVA_03138at 230.748 kb on - strand, within BACOVA_03138at 230.748 kb on - strand, within BACOVA_03138at 230.780 kb on + strand, within BACOVA_03138at 230.781 kb on - strand, within BACOVA_03138at 230.793 kb on + strand, within BACOVA_03138at 230.797 kb on + strand, within BACOVA_03138at 230.798 kb on - strand, within BACOVA_03138at 230.817 kb on - strandat 230.844 kb on + strandat 230.845 kb on - strandat 230.854 kb on - strandat 230.854 kb on - strandat 230.859 kb on + strandat 230.870 kb on - strandat 230.933 kb on + strandat 230.938 kb on + strandat 230.949 kb on - strandat 230.985 kb on + strand, within BACOVA_03139at 230.986 kb on - strand, within BACOVA_03139at 230.991 kb on + strand, within BACOVA_03139at 230.991 kb on + strand, within BACOVA_03139at 230.992 kb on - strand, within BACOVA_03139at 231.023 kb on + strand, within BACOVA_03139at 231.066 kb on - strand, within BACOVA_03139at 231.066 kb on - strand, within BACOVA_03139at 231.070 kb on + strand, within BACOVA_03139at 231.108 kb on - strand, within BACOVA_03139at 231.116 kb on - strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.119 kb on + strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.120 kb on - strand, within BACOVA_03139at 231.212 kb on + strand, within BACOVA_03139at 231.212 kb on + strand, within BACOVA_03139at 231.213 kb on - strand, within BACOVA_03139at 231.213 kb on - strand, within BACOVA_03139at 231.299 kb on - strand, within BACOVA_03139at 231.365 kb on + strand, within BACOVA_03139at 231.382 kb on - strand, within BACOVA_03139at 231.382 kb on - strand, within BACOVA_03139at 231.384 kb on - strand, within BACOVA_03139at 231.384 kb on - strand, within BACOVA_03139at 231.384 kb on - strand, within BACOVA_03139at 231.440 kb on - strand, within BACOVA_03139at 231.553 kb on + strandat 231.554 kb on - strandat 231.554 kb on - strandat 231.568 kb on - strandat 231.585 kb on + strandat 231.585 kb on + strandat 231.590 kb on + strandat 231.726 kb on - strand, within BACOVA_03140at 231.745 kb on + strand, within BACOVA_03140at 231.764 kb on - strand, within BACOVA_03140at 231.764 kb on - strand, within BACOVA_03140at 231.765 kb on + strand, within BACOVA_03140at 231.766 kb on - strand, within BACOVA_03140at 231.766 kb on - strand, within BACOVA_03140at 231.766 kb on - strand, within BACOVA_03140at 231.772 kb on + strand, within BACOVA_03140at 231.772 kb on + strand, within BACOVA_03140at 231.886 kb on + strand, within BACOVA_03140at 231.887 kb on - strand, within BACOVA_03140at 231.905 kb on + strand, within BACOVA_03140at 231.909 kb on - strand, within BACOVA_03140at 231.981 kb on + strand, within BACOVA_03140at 232.043 kb on + strand, within BACOVA_03140at 232.044 kb on - strand, within BACOVA_03140at 232.144 kb on + strand, within BACOVA_03140at 232.154 kb on + strand, within BACOVA_03140at 232.155 kb on - strand, within BACOVA_03140at 232.156 kb on + strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.157 kb on - strand, within BACOVA_03140at 232.164 kb on + strand, within BACOVA_03140at 232.199 kb on - strand, within BACOVA_03140at 232.262 kb on + strand, within BACOVA_03140at 232.262 kb on + strand, within BACOVA_03140at 232.263 kb on - strand, within BACOVA_03140at 232.263 kb on - strand, within BACOVA_03140at 232.265 kb on - strand, within BACOVA_03140at 232.301 kb on - strand, within BACOVA_03140at 232.319 kb on + strand, within BACOVA_03140at 232.411 kb on + strand, within BACOVA_03140at 232.427 kb on - strand, within BACOVA_03140at 232.517 kb on - strand, within BACOVA_03140at 232.517 kb on - strand, within BACOVA_03140

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C)
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229,914 + -0.3
229,915 - +0.2
229,915 - -1.6
229,915 - -1.9
229,920 - -0.2
229,925 - -0.4
229,925 - -0.7
229,934 - -0.5
229,986 - +0.4
230,079 + BACOVA_03138 0.13 +0.0
230,086 + BACOVA_03138 0.14 -3.4
230,086 + BACOVA_03138 0.14 +0.1
230,086 + BACOVA_03138 0.14 +0.6
230,086 + BACOVA_03138 0.14 -0.4
230,088 + BACOVA_03138 0.14 -0.5
230,089 - BACOVA_03138 0.14 -1.6
230,094 + BACOVA_03138 0.15 -0.8
230,108 - BACOVA_03138 0.16 +0.3
230,114 - BACOVA_03138 0.17 +0.9
230,143 + BACOVA_03138 0.20 -0.2
230,170 - BACOVA_03138 0.23 +0.5
230,185 - BACOVA_03138 0.24 -1.2
230,226 + BACOVA_03138 0.29 +0.5
230,227 - BACOVA_03138 0.29 +0.6
230,227 - BACOVA_03138 0.29 +0.7
230,238 + BACOVA_03138 0.30 -0.3
230,238 + BACOVA_03138 0.30 +0.4
230,239 - BACOVA_03138 0.30 -1.7
230,291 + BACOVA_03138 0.36 +0.0
230,292 - BACOVA_03138 0.36 -0.2
230,337 + BACOVA_03138 0.41 -0.4
230,337 + BACOVA_03138 0.41 -0.1
230,431 - BACOVA_03138 0.51 +1.2
230,489 - BACOVA_03138 0.57 +1.0
230,493 + BACOVA_03138 0.57 +1.4
230,494 - BACOVA_03138 0.57 -0.3
230,503 - BACOVA_03138 0.58 +1.6
230,505 + BACOVA_03138 0.59 -0.1
230,506 - BACOVA_03138 0.59 +0.7
230,506 - BACOVA_03138 0.59 -0.4
230,519 + BACOVA_03138 0.60 +0.3
230,524 - BACOVA_03138 0.61 +0.1
230,607 + BACOVA_03138 0.69 -0.8
230,635 - BACOVA_03138 0.72 -0.7
230,668 - BACOVA_03138 0.76 -0.9
230,668 - BACOVA_03138 0.76 -1.2
230,672 + BACOVA_03138 0.76 -0.5
230,672 + BACOVA_03138 0.76 -0.1
230,672 + BACOVA_03138 0.76 -0.9
230,692 + BACOVA_03138 0.78 +0.8
230,693 - BACOVA_03138 0.79 +1.7
230,695 + BACOVA_03138 0.79 +0.7
230,695 + BACOVA_03138 0.79 +0.5
230,747 + BACOVA_03138 0.84 -0.7
230,747 + BACOVA_03138 0.84 +1.2
230,748 - BACOVA_03138 0.84 -1.5
230,748 - BACOVA_03138 0.84 -0.6
230,780 + BACOVA_03138 0.88 +0.2
230,781 - BACOVA_03138 0.88 +0.1
230,793 + BACOVA_03138 0.89 +0.4
230,797 + BACOVA_03138 0.90 +0.7
230,798 - BACOVA_03138 0.90 +0.7
230,817 - +1.4
230,844 + -0.6
230,845 - +2.4
230,854 - -0.2
230,854 - -0.2
230,859 + +0.1
230,870 - -1.5
230,933 + +0.4
230,938 + +0.1
230,949 - -0.1
230,985 + BACOVA_03139 0.12 +0.1
230,986 - BACOVA_03139 0.12 +0.0
230,991 + BACOVA_03139 0.13 +0.7
230,991 + BACOVA_03139 0.13 -1.3
230,992 - BACOVA_03139 0.13 -0.2
231,023 + BACOVA_03139 0.18 +0.3
231,066 - BACOVA_03139 0.25 -0.1
231,066 - BACOVA_03139 0.25 -0.6
231,070 + BACOVA_03139 0.26 -1.2
231,108 - BACOVA_03139 0.32 -0.9
231,116 - BACOVA_03139 0.33 -2.4
231,119 + BACOVA_03139 0.34 -0.3
231,119 + BACOVA_03139 0.34 -1.3
231,119 + BACOVA_03139 0.34 -1.6
231,119 + BACOVA_03139 0.34 +0.9
231,120 - BACOVA_03139 0.34 +0.4
231,120 - BACOVA_03139 0.34 -0.1
231,120 - BACOVA_03139 0.34 +0.2
231,120 - BACOVA_03139 0.34 +0.4
231,120 - BACOVA_03139 0.34 -0.3
231,120 - BACOVA_03139 0.34 +0.9
231,212 + BACOVA_03139 0.49 -0.7
231,212 + BACOVA_03139 0.49 +0.3
231,213 - BACOVA_03139 0.49 +0.5
231,213 - BACOVA_03139 0.49 +0.7
231,299 - BACOVA_03139 0.63 -0.9
231,365 + BACOVA_03139 0.74 -1.9
231,382 - BACOVA_03139 0.76 -0.3
231,382 - BACOVA_03139 0.76 +0.5
231,384 - BACOVA_03139 0.77 -1.2
231,384 - BACOVA_03139 0.77 +0.8
231,384 - BACOVA_03139 0.77 -4.9
231,440 - BACOVA_03139 0.86 -0.3
231,553 + -0.5
231,554 - +0.3
231,554 - -0.7
231,568 - -0.8
231,585 + +0.0
231,585 + -0.8
231,590 + +0.4
231,726 - BACOVA_03140 0.16 -3.2
231,745 + BACOVA_03140 0.17 -1.5
231,764 - BACOVA_03140 0.19 +1.7
231,764 - BACOVA_03140 0.19 -0.0
231,765 + BACOVA_03140 0.19 +0.1
231,766 - BACOVA_03140 0.19 -0.6
231,766 - BACOVA_03140 0.19 -1.4
231,766 - BACOVA_03140 0.19 -0.7
231,772 + BACOVA_03140 0.19 +0.5
231,772 + BACOVA_03140 0.19 +0.2
231,886 + BACOVA_03140 0.28 +0.5
231,887 - BACOVA_03140 0.29 -0.1
231,905 + BACOVA_03140 0.30 +0.8
231,909 - BACOVA_03140 0.30 -0.3
231,981 + BACOVA_03140 0.36 +0.1
232,043 + BACOVA_03140 0.41 +0.4
232,044 - BACOVA_03140 0.41 -1.6
232,144 + BACOVA_03140 0.49 +0.2
232,154 + BACOVA_03140 0.50 +1.2
232,155 - BACOVA_03140 0.50 -0.5
232,156 + BACOVA_03140 0.50 -0.1
232,157 - BACOVA_03140 0.50 -0.4
232,157 - BACOVA_03140 0.50 -0.8
232,157 - BACOVA_03140 0.50 -1.0
232,157 - BACOVA_03140 0.50 +0.9
232,164 + BACOVA_03140 0.50 +0.2
232,199 - BACOVA_03140 0.53 +0.2
232,262 + BACOVA_03140 0.58 -0.6
232,262 + BACOVA_03140 0.58 +1.0
232,263 - BACOVA_03140 0.58 -0.1
232,263 - BACOVA_03140 0.58 +0.1
232,265 - BACOVA_03140 0.58 +0.1
232,301 - BACOVA_03140 0.61 +0.2
232,319 + BACOVA_03140 0.62 +0.9
232,411 + BACOVA_03140 0.70 -1.0
232,427 - BACOVA_03140 0.71 -0.8
232,517 - BACOVA_03140 0.78 +0.1
232,517 - BACOVA_03140 0.78 -0.4

Or see this region's nucleotide sequence