Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF883 and GFF884 overlap by 4 nucleotides GFF884 and GFF885 are separated by 31 nucleotides GFF885 and GFF886 are separated by 54 nucleotides
GFF883 - CAIB/BAIF family protein, at 609,104 to 610,327
GFF883
GFF884 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 610,324 to 612,306
GFF884
GFF885 - Naphthoate synthase (EC 4.1.3.36), at 612,338 to 613,120
GFF885
GFF886 - Probable acyl-CoA dehydrogenase (EC 1.3.99.3), at 613,175 to 614,329
GFF886
Position (kb) 610
611
612
613 Strain fitness (log2 ratio) -2
-1
0
1 at 609.461 kb on + strand, within GFF883 at 609.461 kb on + strand, within GFF883 at 609.464 kb on + strand, within GFF883 at 609.465 kb on - strand, within GFF883 at 609.551 kb on + strand, within GFF883 at 609.551 kb on + strand, within GFF883 at 609.743 kb on + strand, within GFF883 at 609.743 kb on + strand, within GFF883 at 609.744 kb on - strand, within GFF883 at 610.030 kb on + strand, within GFF883 at 610.128 kb on + strand, within GFF883 at 610.207 kb on + strand at 610.208 kb on - strand at 610.235 kb on + strand at 610.441 kb on + strand at 610.504 kb on + strand at 610.597 kb on + strand, within GFF884 at 610.597 kb on + strand, within GFF884 at 610.597 kb on + strand, within GFF884 at 610.598 kb on - strand, within GFF884 at 610.768 kb on + strand, within GFF884 at 610.923 kb on - strand, within GFF884 at 611.137 kb on + strand, within GFF884 at 611.138 kb on - strand, within GFF884 at 611.333 kb on - strand, within GFF884 at 611.359 kb on + strand, within GFF884 at 611.360 kb on - strand, within GFF884 at 611.450 kb on + strand, within GFF884 at 611.527 kb on + strand, within GFF884 at 611.528 kb on - strand, within GFF884 at 611.761 kb on + strand, within GFF884 at 611.761 kb on + strand, within GFF884 at 611.761 kb on + strand, within GFF884 at 611.761 kb on + strand, within GFF884 at 611.803 kb on + strand, within GFF884 at 611.803 kb on + strand, within GFF884 at 611.804 kb on - strand, within GFF884 at 611.816 kb on - strand, within GFF884 at 611.938 kb on + strand, within GFF884 at 611.938 kb on + strand, within GFF884 at 611.938 kb on + strand, within GFF884 at 611.939 kb on - strand, within GFF884 at 611.939 kb on - strand, within GFF884 at 611.939 kb on - strand, within GFF884 at 612.013 kb on + strand, within GFF884 at 612.014 kb on - strand, within GFF884 at 612.014 kb on - strand, within GFF884 at 612.016 kb on - strand, within GFF884 at 612.322 kb on - strand at 612.360 kb on - strand at 612.374 kb on + strand at 612.374 kb on + strand at 612.375 kb on - strand at 612.650 kb on + strand, within GFF885 at 612.650 kb on + strand, within GFF885 at 612.651 kb on - strand, within GFF885 at 612.651 kb on - strand, within GFF885 at 612.761 kb on + strand, within GFF885 at 612.761 kb on + strand, within GFF885 at 612.762 kb on - strand, within GFF885 at 612.762 kb on - strand, within GFF885 at 612.914 kb on + strand, within GFF885 at 612.914 kb on + strand, within GFF885 at 613.036 kb on + strand, within GFF885 at 613.036 kb on + strand, within GFF885 at 613.037 kb on - strand, within GFF885 at 613.040 kb on + strand, within GFF885 at 613.040 kb on + strand, within GFF885 at 613.041 kb on - strand, within GFF885 at 613.041 kb on - strand, within GFF885 at 613.190 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 609,461 + GFF883 0.29 +0.8 609,461 + GFF883 0.29 +0.1 609,464 + GFF883 0.29 +0.1 609,465 - GFF883 0.29 -0.3 609,551 + GFF883 0.37 -2.2 609,551 + GFF883 0.37 +0.4 609,743 + GFF883 0.52 -0.0 609,743 + GFF883 0.52 +0.6 609,744 - GFF883 0.52 +0.2 610,030 + GFF883 0.76 -0.0 610,128 + GFF883 0.84 -0.2 610,207 + +1.0 610,208 - +0.1 610,235 + +0.1 610,441 + +0.1 610,504 + +0.1 610,597 + GFF884 0.14 -0.1 610,597 + GFF884 0.14 -0.6 610,597 + GFF884 0.14 -0.0 610,598 - GFF884 0.14 -0.4 610,768 + GFF884 0.22 +0.4 610,923 - GFF884 0.30 -0.3 611,137 + GFF884 0.41 +0.2 611,138 - GFF884 0.41 -0.7 611,333 - GFF884 0.51 -0.5 611,359 + GFF884 0.52 -1.2 611,360 - GFF884 0.52 -0.8 611,450 + GFF884 0.57 +0.5 611,527 + GFF884 0.61 +0.2 611,528 - GFF884 0.61 -0.2 611,761 + GFF884 0.72 -1.1 611,761 + GFF884 0.72 -0.6 611,761 + GFF884 0.72 -1.2 611,761 + GFF884 0.72 -0.0 611,803 + GFF884 0.75 +0.9 611,803 + GFF884 0.75 +0.0 611,804 - GFF884 0.75 +0.5 611,816 - GFF884 0.75 +1.4 611,938 + GFF884 0.81 -0.2 611,938 + GFF884 0.81 -0.2 611,938 + GFF884 0.81 +0.5 611,939 - GFF884 0.81 -0.0 611,939 - GFF884 0.81 +0.6 611,939 - GFF884 0.81 -0.7 612,013 + GFF884 0.85 +0.1 612,014 - GFF884 0.85 +0.1 612,014 - GFF884 0.85 -1.0 612,016 - GFF884 0.85 -0.4 612,322 - -0.7 612,360 - +0.3 612,374 + -0.4 612,374 + +1.2 612,375 - -0.3 612,650 + GFF885 0.40 +0.1 612,650 + GFF885 0.40 +0.1 612,651 - GFF885 0.40 +0.3 612,651 - GFF885 0.40 +0.0 612,761 + GFF885 0.54 +0.2 612,761 + GFF885 0.54 -0.6 612,762 - GFF885 0.54 -0.3 612,762 - GFF885 0.54 -1.5 612,914 + GFF885 0.74 -0.4 612,914 + GFF885 0.74 -0.1 613,036 + GFF885 0.89 -1.4 613,036 + GFF885 0.89 +0.5 613,037 - GFF885 0.89 +0.1 613,040 + GFF885 0.90 +0.6 613,040 + GFF885 0.90 -0.3 613,041 - GFF885 0.90 -0.2 613,041 - GFF885 0.90 +0.2 613,190 + -0.1
Or see this region's nucleotide sequence