Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF827 and GFF828 overlap by 4 nucleotides GFF828 and GFF829 are separated by 15 nucleotides
GFF827 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 522,549 to 523,643
GFF827
GFF828 - Hypothetical ATP-binding protein UPF0042, contains P-loop, at 523,640 to 524,563
GFF828
GFF829 - DNA repair protein RecN, at 524,579 to 526,201
GFF829
Position (kb) 523
524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 522.678 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.738 kb on + strand, within GFF827 at 522.739 kb on - strand, within GFF827 at 522.739 kb on - strand, within GFF827 at 522.739 kb on - strand, within GFF827 at 522.739 kb on - strand, within GFF827 at 522.742 kb on - strand, within GFF827 at 522.831 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.834 kb on + strand, within GFF827 at 522.835 kb on - strand, within GFF827 at 522.835 kb on - strand, within GFF827 at 522.835 kb on - strand, within GFF827 at 523.137 kb on + strand, within GFF827 at 523.138 kb on - strand, within GFF827 at 523.389 kb on + strand, within GFF827 at 523.389 kb on + strand, within GFF827 at 523.389 kb on + strand, within GFF827 at 523.389 kb on + strand, within GFF827 at 523.390 kb on - strand, within GFF827 at 523.390 kb on - strand, within GFF827 at 523.641 kb on + strand at 523.641 kb on + strand at 523.641 kb on + strand at 523.642 kb on - strand at 523.642 kb on - strand at 523.642 kb on - strand at 523.642 kb on - strand at 523.800 kb on + strand, within GFF828 at 523.801 kb on - strand, within GFF828 at 523.801 kb on - strand, within GFF828 at 523.896 kb on + strand, within GFF828 at 523.897 kb on - strand, within GFF828 at 523.948 kb on - strand, within GFF828 at 524.460 kb on + strand, within GFF828 at 525.375 kb on + strand, within GFF829 at 525.376 kb on - strand, within GFF829
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 522,678 + GFF827 0.12 +0.1 522,738 + GFF827 0.17 +0.2 522,738 + GFF827 0.17 +0.2 522,738 + GFF827 0.17 +0.6 522,738 + GFF827 0.17 +0.1 522,738 + GFF827 0.17 -0.9 522,738 + GFF827 0.17 +0.6 522,739 - GFF827 0.17 -0.7 522,739 - GFF827 0.17 +0.6 522,739 - GFF827 0.17 -0.0 522,739 - GFF827 0.17 +0.2 522,742 - GFF827 0.18 +0.7 522,831 + GFF827 0.26 +1.4 522,834 + GFF827 0.26 +0.5 522,834 + GFF827 0.26 +0.1 522,834 + GFF827 0.26 +0.3 522,834 + GFF827 0.26 +0.1 522,834 + GFF827 0.26 -0.3 522,834 + GFF827 0.26 -0.0 522,835 - GFF827 0.26 -2.8 522,835 - GFF827 0.26 -0.0 522,835 - GFF827 0.26 -0.1 523,137 + GFF827 0.54 +0.1 523,138 - GFF827 0.54 +0.5 523,389 + GFF827 0.77 -0.0 523,389 + GFF827 0.77 +0.0 523,389 + GFF827 0.77 -0.6 523,389 + GFF827 0.77 +1.9 523,390 - GFF827 0.77 -0.7 523,390 - GFF827 0.77 +0.4 523,641 + -0.3 523,641 + -0.1 523,641 + +1.2 523,642 - +0.5 523,642 - +1.0 523,642 - -0.2 523,642 - +0.9 523,800 + GFF828 0.17 -0.9 523,801 - GFF828 0.17 -0.4 523,801 - GFF828 0.17 -0.3 523,896 + GFF828 0.28 -1.4 523,897 - GFF828 0.28 -0.3 523,948 - GFF828 0.33 -1.3 524,460 + GFF828 0.89 -0.9 525,375 + GFF829 0.49 -0.2 525,376 - GFF829 0.49 -0.7
Or see this region's nucleotide sequence