Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF789 and GFF790 are separated by 64 nucleotides GFF790 and GFF791 are separated by 13 nucleotides GFF791 and GFF792 are separated by 5 nucleotides GFF792 and GFF793 are separated by 8 nucleotides
GFF789 - hypothetical protein, at 484,921 to 485,799
GFF789
GFF790 - Probable lipoprotein, at 485,864 to 486,358
GFF790
GFF791 - Aldose 1-epimerase (EC 5.1.3.3), at 486,372 to 487,430
GFF791
GFF792 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41), at 487,436 to 488,347
GFF792
GFF793 - Tricarboxylate transport protein TctC, at 488,356 to 489,327
GFF793
Position (kb) 486
487
488 Strain fitness (log2 ratio) -1
0
1 at 485.521 kb on + strand, within GFF789 at 485.522 kb on - strand, within GFF789 at 485.683 kb on + strand, within GFF789 at 486.042 kb on - strand, within GFF790 at 486.219 kb on - strand, within GFF790 at 486.219 kb on - strand, within GFF790 at 486.410 kb on - strand at 486.568 kb on + strand, within GFF791 at 486.568 kb on + strand, within GFF791 at 486.568 kb on + strand, within GFF791 at 486.569 kb on - strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.679 kb on + strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.680 kb on - strand, within GFF791 at 486.872 kb on - strand, within GFF791 at 486.962 kb on - strand, within GFF791 at 487.238 kb on - strand, within GFF791 at 487.414 kb on + strand at 487.437 kb on + strand at 487.437 kb on + strand at 487.438 kb on - strand at 487.438 kb on - strand at 487.438 kb on - strand at 487.603 kb on - strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.668 kb on + strand, within GFF792 at 487.669 kb on - strand, within GFF792 at 487.740 kb on + strand, within GFF792 at 487.741 kb on - strand, within GFF792 at 487.741 kb on - strand, within GFF792 at 487.752 kb on + strand, within GFF792 at 487.752 kb on + strand, within GFF792 at 487.752 kb on + strand, within GFF792 at 487.753 kb on - strand, within GFF792 at 487.753 kb on - strand, within GFF792 at 487.753 kb on - strand, within GFF792 at 487.753 kb on - strand, within GFF792 at 487.782 kb on + strand, within GFF792 at 487.783 kb on - strand, within GFF792 at 487.927 kb on - strand, within GFF792 at 488.007 kb on + strand, within GFF792 at 488.007 kb on + strand, within GFF792 at 488.008 kb on - strand, within GFF792 at 488.154 kb on + strand, within GFF792 at 488.179 kb on - strand, within GFF792 at 488.251 kb on - strand, within GFF792
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 485,521 + GFF789 0.68 +0.3 485,522 - GFF789 0.68 -0.3 485,683 + GFF789 0.87 +0.6 486,042 - GFF790 0.36 +0.4 486,219 - GFF790 0.72 -1.4 486,219 - GFF790 0.72 +0.5 486,410 - +0.2 486,568 + GFF791 0.19 +0.9 486,568 + GFF791 0.19 -0.3 486,568 + GFF791 0.19 -0.2 486,569 - GFF791 0.19 +0.2 486,679 + GFF791 0.29 -0.0 486,679 + GFF791 0.29 -0.2 486,679 + GFF791 0.29 +0.0 486,679 + GFF791 0.29 +0.7 486,679 + GFF791 0.29 +1.0 486,679 + GFF791 0.29 +0.5 486,680 - GFF791 0.29 +0.2 486,680 - GFF791 0.29 +0.9 486,680 - GFF791 0.29 -0.4 486,680 - GFF791 0.29 +0.2 486,680 - GFF791 0.29 +0.3 486,680 - GFF791 0.29 +0.2 486,680 - GFF791 0.29 -0.5 486,872 - GFF791 0.47 +0.0 486,962 - GFF791 0.56 -0.4 487,238 - GFF791 0.82 -0.2 487,414 + +0.1 487,437 + +0.6 487,437 + +0.6 487,438 - +0.5 487,438 - +0.6 487,438 - +0.2 487,603 - GFF792 0.18 +0.2 487,668 + GFF792 0.25 -0.4 487,668 + GFF792 0.25 -0.3 487,668 + GFF792 0.25 +0.0 487,668 + GFF792 0.25 +0.5 487,668 + GFF792 0.25 -0.0 487,668 + GFF792 0.25 -0.9 487,668 + GFF792 0.25 +0.5 487,669 - GFF792 0.26 -0.4 487,740 + GFF792 0.33 -0.0 487,741 - GFF792 0.33 +0.1 487,741 - GFF792 0.33 +0.1 487,752 + GFF792 0.35 -0.7 487,752 + GFF792 0.35 +1.1 487,752 + GFF792 0.35 +0.8 487,753 - GFF792 0.35 +0.5 487,753 - GFF792 0.35 +0.3 487,753 - GFF792 0.35 +0.4 487,753 - GFF792 0.35 +0.4 487,782 + GFF792 0.38 -0.4 487,783 - GFF792 0.38 +0.1 487,927 - GFF792 0.54 +0.2 488,007 + GFF792 0.63 -1.1 488,007 + GFF792 0.63 +0.4 488,008 - GFF792 0.63 -0.1 488,154 + GFF792 0.79 -0.6 488,179 - GFF792 0.81 -0.6 488,251 - GFF792 0.89 +0.3
Or see this region's nucleotide sequence