Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF78 and GFF79 are separated by 22 nucleotides GFF79 and GFF80 are separated by 106 nucleotides
GFF78 - Hemolysin activation/secretion protein associated with VreARI signalling system, at 77,590 to 79,200
GFF78
GFF79 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 79,223 to 89,392
GFF79
GFF80 - MotA/TolQ/ExbB proton channel family protein, at 89,499 to 91,241
GFF80
Position (kb) 79
80
81
82
83
84
85
86
87
88
89
90 Strain fitness (log2 ratio) -2
-1
0
1 at 78.382 kb on + strand, within GFF78 at 78.383 kb on - strand, within GFF78 at 78.733 kb on + strand, within GFF78 at 78.734 kb on - strand, within GFF78 at 78.739 kb on + strand, within GFF78 at 78.880 kb on + strand, within GFF78 at 79.189 kb on + strand at 79.189 kb on + strand at 79.190 kb on - strand at 79.190 kb on - strand at 80.087 kb on + strand at 80.594 kb on + strand, within GFF79 at 80.768 kb on + strand, within GFF79 at 80.769 kb on - strand, within GFF79 at 80.769 kb on - strand, within GFF79 at 80.769 kb on - strand, within GFF79 at 80.931 kb on + strand, within GFF79 at 83.612 kb on + strand, within GFF79 at 84.869 kb on + strand, within GFF79 at 84.944 kb on + strand, within GFF79 at 85.836 kb on - strand, within GFF79 at 86.807 kb on + strand, within GFF79 at 86.993 kb on + strand, within GFF79 at 87.482 kb on + strand, within GFF79 at 87.632 kb on + strand, within GFF79 at 88.128 kb on - strand, within GFF79 at 88.265 kb on + strand, within GFF79 at 88.265 kb on + strand, within GFF79 at 88.265 kb on + strand, within GFF79 at 88.266 kb on - strand, within GFF79 at 88.545 kb on - strand at 89.847 kb on + strand, within GFF80 at 89.848 kb on - strand, within GFF80 at 89.917 kb on - strand, within GFF80
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 78,382 + GFF78 0.49 -0.5 78,383 - GFF78 0.49 -1.2 78,733 + GFF78 0.71 +0.3 78,734 - GFF78 0.71 +0.9 78,739 + GFF78 0.71 -0.4 78,880 + GFF78 0.80 +1.1 79,189 + -0.2 79,189 + +0.2 79,190 - +0.2 79,190 - -0.3 80,087 + +0.3 80,594 + GFF79 0.13 +0.7 80,768 + GFF79 0.15 +0.3 80,769 - GFF79 0.15 -0.1 80,769 - GFF79 0.15 -0.0 80,769 - GFF79 0.15 +0.8 80,931 + GFF79 0.17 -0.0 83,612 + GFF79 0.43 -0.5 84,869 + GFF79 0.56 +0.6 84,944 + GFF79 0.56 +0.1 85,836 - GFF79 0.65 +0.2 86,807 + GFF79 0.75 -0.3 86,993 + GFF79 0.76 +0.2 87,482 + GFF79 0.81 +0.9 87,632 + GFF79 0.83 +0.1 88,128 - GFF79 0.88 -0.8 88,265 + GFF79 0.89 +0.5 88,265 + GFF79 0.89 +0.7 88,265 + GFF79 0.89 -1.6 88,266 - GFF79 0.89 +0.3 88,545 - +1.2 89,847 + GFF80 0.20 -2.1 89,848 - GFF80 0.20 +0.1 89,917 - GFF80 0.24 -0.4
Or see this region's nucleotide sequence