Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF742 and GFF743 overlap by 4 nucleotides GFF743 and GFF744 are separated by 77 nucleotides GFF744 and GFF745 overlap by 4 nucleotides GFF745 and GFF746 are separated by 394 nucleotides
GFF742 - Lipoprotein releasing system ATP-binding protein LolD, at 429,097 to 429,771
GFF742
GFF743 - Protein of unknown function DUF306, at 429,768 to 430,193
GFF743
GFF744 - Putative deoxyribonuclease YjjV, at 430,271 to 431,104
GFF744
GFF745 - G:T/U mismatch-specific uracil/thymine DNA-glycosylase, at 431,101 to 431,598
GFF745
GFF746 - Spermidine synthase (EC 2.5.1.16), at 431,993 to 432,775
GFF746
Position (kb) 430
431
432 Strain fitness (log2 ratio) -1
0
1 at 429.770 kb on - strand at 429.770 kb on - strand at 430.264 kb on + strand at 430.264 kb on + strand at 430.265 kb on - strand at 430.448 kb on + strand, within GFF744 at 430.448 kb on + strand, within GFF744 at 430.631 kb on + strand, within GFF744 at 430.631 kb on + strand, within GFF744 at 430.928 kb on + strand, within GFF744 at 430.929 kb on - strand, within GFF744 at 431.200 kb on + strand, within GFF745 at 431.200 kb on + strand, within GFF745 at 431.201 kb on - strand, within GFF745 at 431.203 kb on + strand, within GFF745 at 431.204 kb on - strand, within GFF745 at 431.204 kb on - strand, within GFF745 at 431.275 kb on + strand, within GFF745 at 431.275 kb on + strand, within GFF745 at 431.276 kb on - strand, within GFF745 at 431.276 kb on - strand, within GFF745 at 431.331 kb on - strand, within GFF745 at 431.712 kb on + strand at 431.757 kb on - strand at 431.798 kb on + strand at 431.798 kb on + strand at 431.899 kb on + strand at 431.908 kb on + strand at 431.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 429,770 - +0.3 429,770 - +0.1 430,264 + -0.2 430,264 + +0.3 430,265 - +0.9 430,448 + GFF744 0.21 -0.3 430,448 + GFF744 0.21 +0.6 430,631 + GFF744 0.43 +0.2 430,631 + GFF744 0.43 -0.2 430,928 + GFF744 0.79 +0.3 430,929 - GFF744 0.79 +0.5 431,200 + GFF745 0.20 -0.3 431,200 + GFF745 0.20 -0.1 431,201 - GFF745 0.20 +0.1 431,203 + GFF745 0.20 +1.2 431,204 - GFF745 0.21 -1.1 431,204 - GFF745 0.21 -0.5 431,275 + GFF745 0.35 -0.4 431,275 + GFF745 0.35 -0.1 431,276 - GFF745 0.35 -0.5 431,276 - GFF745 0.35 -0.2 431,331 - GFF745 0.46 +0.4 431,712 + -0.1 431,757 - +0.4 431,798 + -0.1 431,798 + -0.5 431,899 + -0.3 431,908 + -0.5 431,909 - +0.1
Or see this region's nucleotide sequence