Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF69 and GFF70 overlap by 1 nucleotides GFF70 and GFF71 overlap by 4 nucleotides GFF71 and GFF72 overlap by 4 nucleotides GFF72 and GFF73 overlap by 1 nucleotides GFF73 and GFF74 overlap by 14 nucleotides
GFF69 - Predicted secretion system X transmembrane protein 2, at 69,574 to 70,113
GFF69
GFF70 - Predicted secretion system X translation initiation factor, at 70,113 to 70,625
GFF70
GFF71 - Predicted secretion system X protein GspD-like, at 70,622 to 72,694
GFF71
GFF72 - Predicted secretion system X protein GspG-like, at 72,691 to 73,167
GFF72
GFF73 - Predicted secretion system X protein GspG-like 2, at 73,167 to 73,550
GFF73
GFF74 - Predicted secretion system X pseudopilin PulG-like, at 73,537 to 74,055
GFF74
Position (kb) 70
71
72
73 Strain fitness (log2 ratio) -1
0
1 at 70.096 kb on + strand at 70.534 kb on - strand, within GFF70 at 70.534 kb on - strand, within GFF70 at 70.575 kb on + strand at 70.575 kb on + strand at 70.576 kb on - strand at 70.807 kb on + strand at 70.808 kb on - strand at 70.811 kb on + strand at 70.812 kb on - strand at 70.904 kb on + strand, within GFF71 at 72.051 kb on - strand, within GFF71 at 73.106 kb on - strand, within GFF72 at 73.536 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 70,096 + +0.0 70,534 - GFF70 0.82 +0.2 70,534 - GFF70 0.82 +0.3 70,575 + +0.6 70,575 + +0.0 70,576 - -0.0 70,807 + +0.2 70,808 - -0.4 70,811 + -0.4 70,812 - -0.5 70,904 + GFF71 0.14 -0.6 72,051 - GFF71 0.69 -0.7 73,106 - GFF72 0.87 +0.3 73,536 + -1.2
Or see this region's nucleotide sequence