Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF62 and GFF63 are separated by 178 nucleotides GFF63 and GFF64 are separated by 191 nucleotides GFF64 and GFF65 are separated by 7 nucleotides
GFF62 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 62,824 to 63,867
GFF62
GFF63 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 64,046 to 64,735
GFF63
GFF64 - Predicted secretion system X protein GspG-like 3, at 64,927 to 65,358
GFF64
GFF65 - Predicted secretion system X protein GspF-like, at 65,366 to 66,556
GFF65
Position (kb) 64
65 Strain fitness (log2 ratio) -1
0
1
2 at 63.200 kb on + strand, within GFF62 at 63.201 kb on - strand, within GFF62 at 63.207 kb on - strand, within GFF62 at 63.207 kb on - strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.696 kb on - strand, within GFF62 at 63.906 kb on - strand at 63.917 kb on - strand at 63.917 kb on - strand at 63.917 kb on - strand at 64.015 kb on - strand at 64.015 kb on - strand at 64.031 kb on + strand at 64.350 kb on - strand, within GFF63 at 65.251 kb on + strand, within GFF64 at 65.372 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 63,200 + GFF62 0.36 +0.2 63,201 - GFF62 0.36 +0.7 63,207 - GFF62 0.37 -0.7 63,207 - GFF62 0.37 -0.3 63,482 + GFF62 0.63 -0.3 63,482 + GFF62 0.63 -0.1 63,482 + GFF62 0.63 -0.5 63,482 + GFF62 0.63 -0.6 63,482 + GFF62 0.63 -0.3 63,483 - GFF62 0.63 +0.3 63,483 - GFF62 0.63 +0.3 63,483 - GFF62 0.63 -1.4 63,483 - GFF62 0.63 -0.2 63,696 - GFF62 0.84 +0.2 63,906 - -0.1 63,917 - +1.9 63,917 - +0.4 63,917 - +0.7 64,015 - -1.3 64,015 - -0.1 64,031 + -0.9 64,350 - GFF63 0.44 +0.1 65,251 + GFF64 0.75 +0.1 65,372 + -1.2
Or see this region's nucleotide sequence