Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF597 and GFF598 are separated by 10 nucleotides GFF598 and GFF599 are separated by 162 nucleotides GFF599 and GFF600 are separated by 7 nucleotides GFF600 and GFF601 are separated by 4 nucleotides
GFF597 - putative exported protein, at 272,266 to 272,514
GFF597
GFF598 - CcsA-related protein, at 272,525 to 273,328
GFF598
GFF599 - Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1), at 273,491 to 274,861
GFF599
GFF600 - Phosphohydrolase (MutT/nudix family protein), at 274,869 to 275,486
GFF600
GFF601 - Transcriptional regulator, IclR family, at 275,491 to 276,252
GFF601
Position (kb) 273
274
275 Strain fitness (log2 ratio) -1
0
1 at 272.507 kb on + strand at 272.507 kb on + strand at 272.507 kb on + strand at 272.508 kb on - strand at 272.601 kb on + strand at 272.601 kb on + strand at 272.601 kb on + strand at 272.601 kb on + strand at 272.601 kb on + strand at 272.602 kb on - strand at 272.602 kb on - strand at 272.602 kb on - strand at 272.919 kb on + strand, within GFF598 at 272.919 kb on + strand, within GFF598 at 273.082 kb on - strand, within GFF598 at 273.161 kb on + strand, within GFF598 at 273.162 kb on + strand, within GFF598 at 273.255 kb on + strand at 273.256 kb on - strand at 273.256 kb on - strand at 274.978 kb on - strand, within GFF600 at 275.442 kb on + strand at 275.481 kb on + strand at 275.481 kb on + strand at 275.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 272,507 + -0.5 272,507 + -0.2 272,507 + +0.4 272,508 - +0.6 272,601 + -0.1 272,601 + -0.7 272,601 + +0.5 272,601 + +1.2 272,601 + -0.8 272,602 - -0.2 272,602 - -1.1 272,602 - -0.6 272,919 + GFF598 0.49 -0.5 272,919 + GFF598 0.49 +0.0 273,082 - GFF598 0.69 -0.1 273,161 + GFF598 0.79 -0.3 273,162 + GFF598 0.79 -0.3 273,255 + -0.3 273,256 - -0.6 273,256 - -1.2 274,978 - GFF600 0.18 +1.0 275,442 + +0.5 275,481 + -1.7 275,481 + -0.7 275,482 - +0.2
Or see this region's nucleotide sequence