Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5771

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
2,798,298	+				-0.2
2,798,298	+				+0.1
2,798,298	+				+0.2
2,798,299	-				-0.1
2,798,302	-				+0.9
2,798,302	-				+0.3
2,798,558	+		GFF5770	0.23	-0.1
2,798,558	+		GFF5770	0.23	-0.6
2,798,559	-		GFF5770	0.23	+0.7
2,798,559	-		GFF5770	0.23	+0.5
2,798,609	+		GFF5770	0.29	-0.1
2,798,610	-		GFF5770	0.29	+0.4
2,798,681	+		GFF5770	0.37	-0.1
2,798,682	-		GFF5770	0.37	+0.7
2,798,780	+		GFF5770	0.48	-0.6
2,798,781	-		GFF5770	0.48	-0.9
2,798,834	+		GFF5770	0.54	-0.3
2,798,835	-		GFF5770	0.54	+0.3
2,798,843	+		GFF5770	0.55	+0.2
2,798,843	+		GFF5770	0.55	+0.5
2,798,844	-		GFF5770	0.55	-0.2
2,798,844	-		GFF5770	0.55	+0.4
2,798,849	+		GFF5770	0.56	+0.2
2,798,850	-		GFF5770	0.56	+0.0
2,798,850	-		GFF5770	0.56	-0.2
2,798,850	-		GFF5770	0.56	+0.5
2,798,850	-		GFF5770	0.56	+0.1
2,798,969	+		GFF5770	0.69	+0.2
2,798,970	-		GFF5770	0.69	-0.2
2,799,057	-		GFF5770	0.79	+0.0
2,799,057	-		GFF5770	0.79	-1.3
2,799,083	+		GFF5770	0.82	-0.1
2,799,228	-				+0.0
2,799,228	-				+0.1
2,799,236	+				-0.4
2,799,236	+				-0.2
2,799,236	+				+0.1
2,799,236	+				-1.0
2,799,237	-				+0.3
2,799,452	+		GFF5771	0.19	-2.6
2,799,452	+		GFF5771	0.19	-3.3
2,799,452	+		GFF5771	0.19	-3.5
2,799,479	+		GFF5771	0.22	-4.9
2,799,491	+		GFF5771	0.24	-3.9
2,799,617	+		GFF5771	0.38	-2.7
2,799,617	+		GFF5771	0.38	-3.7
2,799,618	-		GFF5771	0.38	-4.0
2,799,618	-		GFF5771	0.38	-4.0
2,799,621	-		GFF5771	0.39	-2.9
2,799,764	+		GFF5771	0.55	-1.9
2,799,764	+		GFF5771	0.55	-4.7
2,799,764	+		GFF5771	0.55	-3.0
2,799,764	+		GFF5771	0.55	-3.8
2,800,103	+				-2.4
2,800,104	-				-0.6
2,800,104	-				-1.4
2,800,644	+		GFF5772	0.35	+0.4
2,800,779	+		GFF5772	0.45	-0.6
2,800,780	-		GFF5772	0.45	-2.8