Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5712

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
2,734,759	-				+0.2
2,734,759	-				+0.1
2,734,766	+				-0.3
2,734,766	+				+2.2
2,734,767	-				-0.2
2,734,767	-				-0.9
2,734,768	+				-0.1
2,734,768	+				+0.5
2,734,769	-				+0.2
2,734,769	-				-0.9
2,734,769	-				-0.6
2,734,947	-				+0.1
2,734,947	-				+0.2
2,734,952	+				+0.6
2,734,952	+				-1.2
2,734,953	-				-0.1
2,734,953	-				+0.1
2,735,174	-		GFF5711	0.41	+0.3
2,735,182	-		GFF5711	0.43	-0.4
2,735,447	+				+0.3
2,735,448	-				+0.1
2,735,812	-		GFF5712	0.12	+0.3
2,735,812	-		GFF5712	0.12	+0.5
2,735,812	-		GFF5712	0.12	-0.3
2,735,812	-		GFF5712	0.12	-0.1
2,735,888	+		GFF5712	0.15	+0.1
2,735,888	+		GFF5712	0.15	-0.6
2,735,888	+		GFF5712	0.15	+0.9
2,735,889	-		GFF5712	0.15	+0.2
2,735,889	-		GFF5712	0.15	+0.2
2,735,889	-		GFF5712	0.15	-0.2
2,736,155	+		GFF5712	0.25	-0.0
2,736,156	-		GFF5712	0.25	+0.3
2,736,266	+		GFF5712	0.30	-0.9
2,736,266	+		GFF5712	0.30	+1.0
2,736,267	-		GFF5712	0.30	+0.8
2,736,415	+		GFF5712	0.35	-0.4
2,736,609	-		GFF5712	0.43	+0.4
2,737,089	-		GFF5712	0.61	+0.3
2,737,220	+		GFF5712	0.67	-0.1
2,737,221	-		GFF5712	0.67	+1.0
2,737,920	-				-0.0
2,737,920	-				-0.1
2,737,965	-				+1.0
2,737,965	-				+0.3
2,737,994	+				+0.3
2,738,176	+				+0.1
2,738,186	+				-0.2
2,738,187	-				+0.5
2,738,187	-				+0.2
2,738,195	+				+0.4
2,738,678	-		GFF5713	0.36	+0.9
2,738,769	+		GFF5713	0.42	+0.1
2,738,770	-		GFF5713	0.42	-0.2