Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5433

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
2,435,814	+				-0.2
2,435,826	+				-1.1
2,435,826	+				-0.2
2,435,827	-				-0.3
2,436,276	+		GFF5432	0.49	-0.1
2,436,333	+		GFF5432	0.55	-1.7
2,436,334	-		GFF5432	0.55	-0.1
2,436,615	+		GFF5432	0.82	-0.2
2,436,819	+				+0.0
2,436,820	-				+0.1
2,436,820	-				+0.2
2,437,490	-				+0.4
2,437,490	-				-0.7
2,437,671	+		GFF5434	0.19	+0.7
2,437,765	-		GFF5434	0.31	+0.1
2,437,765	-		GFF5434	0.31	-0.4
2,438,016	+		GFF5434	0.62	-0.1
2,438,016	+		GFF5434	0.62	+0.6
2,438,017	-		GFF5434	0.62	-0.2
2,438,017	-		GFF5434	0.62	+0.1
2,438,442	-		GFF5435	0.15	-0.5