Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5190

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
2,206,229	+		GFF5190	0.17	-0.1
2,206,229	+		GFF5190	0.17	+0.1
2,206,229	+		GFF5190	0.17	+0.3
2,206,230	-		GFF5190	0.17	-0.1
2,206,322	+		GFF5190	0.23	+0.4
2,206,845	-		GFF5190	0.58	-0.0
2,206,886	+		GFF5190	0.61	-0.6
2,206,886	+		GFF5190	0.61	+0.3
2,206,886	+		GFF5190	0.61	+1.4
2,206,887	-		GFF5190	0.61	+0.2
2,206,887	-		GFF5190	0.61	+0.1
2,206,887	-		GFF5190	0.61	-0.2
2,206,904	+		GFF5190	0.62	-0.4
2,206,905	-		GFF5190	0.62	-0.0
2,206,905	-		GFF5190	0.62	+0.2
2,207,255	+		GFF5190	0.86	+0.3
2,207,261	+		GFF5190	0.86	+0.2
2,207,261	+		GFF5190	0.86	+0.6
2,207,262	-		GFF5190	0.86	+0.3
2,207,262	-		GFF5190	0.86	-0.6
2,207,420	+				+0.1
2,207,420	+				-2.3
2,207,421	-				-0.9
2,207,435	+				+0.4
2,207,435	+				-0.4
2,207,436	-				-0.6
2,207,436	-				+0.0
2,207,772	+		GFF5191	0.18	+0.4
2,207,772	+		GFF5191	0.18	+0.3
2,207,773	-		GFF5191	0.18	+1.4
2,208,114	+		GFF5191	0.39	+0.3
2,208,115	-		GFF5191	0.39	-0.2
2,208,115	-		GFF5191	0.39	+0.5
2,208,115	-		GFF5191	0.39	+0.4
2,208,396	+		GFF5191	0.56	-0.1
2,208,396	+		GFF5191	0.56	-0.1
2,208,396	+		GFF5191	0.56	+0.2
2,208,396	+		GFF5191	0.56	+1.0
2,208,397	-		GFF5191	0.56	-0.2
2,208,462	+		GFF5191	0.60	+0.2