Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5041

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
2,052,720	-		GFF5040	0.34	-0.2
2,052,720	-		GFF5040	0.34	+0.2
2,052,720	-		GFF5040	0.34	+0.1
2,052,720	-		GFF5040	0.34	+0.3
2,052,842	+		GFF5040	0.43	-0.5
2,052,843	-		GFF5040	0.43	-0.4
2,052,998	+		GFF5040	0.55	+0.1
2,052,998	+		GFF5040	0.55	+0.1
2,052,999	-		GFF5040	0.55	-0.3
2,053,196	+		GFF5040	0.70	+0.1
2,053,311	-		GFF5040	0.78	+0.4
2,053,511	+				+0.0
2,053,511	+				-0.1
2,053,511	+				+0.0
2,053,797	-		GFF5041	0.13	+0.6
2,053,797	-		GFF5041	0.13	-0.3
2,053,797	-		GFF5041	0.13	+0.4
2,053,904	+		GFF5041	0.21	+0.7
2,053,905	-		GFF5041	0.21	-1.2
2,053,905	-		GFF5041	0.21	+0.0
2,053,973	+		GFF5041	0.26	+0.4
2,054,256	-		GFF5041	0.48	-0.2
2,054,367	-		GFF5041	0.57	+1.1
2,054,381	+		GFF5041	0.58	+0.5
2,054,408	+		GFF5041	0.60	+0.1
2,054,634	-		GFF5041	0.77	+0.1
2,054,922	+				+0.9
2,055,310	-		GFF5042	0.82	-0.4
2,055,539	-		GFF5043	0.12	+0.6
2,055,539	-		GFF5043	0.12	-0.4