Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4981

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
1,996,912	-				+0.5
1,997,368	-		GFF4980	0.45	-0.1
1,998,038	+		GFF4981	0.13	+0.2
1,998,065	+		GFF4981	0.15	+0.4
1,998,065	+		GFF4981	0.15	+1.4
1,998,066	-		GFF4981	0.15	+0.7
1,998,230	+		GFF4981	0.24	+1.0
1,998,565	-		GFF4981	0.44	+0.2
1,998,565	-		GFF4981	0.44	-0.6
1,998,609	+		GFF4981	0.47	+0.1
1,999,011	-		GFF4981	0.70	+0.0
1,999,071	-		GFF4981	0.74	+0.4
1,999,211	+		GFF4981	0.82	-0.0
1,999,212	-		GFF4981	0.82	+0.0
1,999,212	-		GFF4981	0.82	-0.5
1,999,212	-		GFF4981	0.82	+0.4
1,999,389	-				+0.2
1,999,431	-				+0.7
1,999,475	+				+0.5
1,999,518	+				-0.4
1,999,609	-				+0.6
1,999,632	+				+0.4
1,999,638	+				-0.1
1,999,933	+		GFF4982	0.15	-0.0
1,999,933	+		GFF4982	0.15	+1.4
2,000,113	+		GFF4982	0.34	-0.1
2,000,114	-		GFF4982	0.34	+0.4
2,000,114	-		GFF4982	0.34	+0.2
2,000,194	+		GFF4982	0.42	+0.5
2,000,194	+		GFF4982	0.42	-0.3
2,000,194	+		GFF4982	0.42	-0.3
2,000,195	-		GFF4982	0.43	-0.2
2,000,195	-		GFF4982	0.43	-0.0
2,000,338	+		GFF4982	0.57	+0.2