Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4946 and GFF4947 are separated by 22 nucleotides GFF4947 and GFF4948 are separated by 70 nucleotides GFF4948 and GFF4949 are separated by 96 nucleotides GFF4949 and GFF4950 overlap by 4 nucleotides
GFF4946 - Cytosine deaminase (EC 3.5.4.1), at 1,964,516 to 1,965,775
GFF4946
GFF4947 - Creatinine amidohydrolase (EC 3.5.2.10), at 1,965,798 to 1,966,655
GFF4947
GFF4948 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 1,966,726 to 1,967,724
GFF4948
GFF4949 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 1,967,821 to 1,968,630
GFF4949
GFF4950 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 1,968,627 to 1,969,439
GFF4950
Position (kb) 1966
1967
1968 Strain fitness (log2 ratio) -1
0
1 at 1965.785 kb on + strand at 1965.785 kb on + strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.786 kb on - strand at 1965.810 kb on + strand at 1965.810 kb on + strand at 1965.810 kb on + strand at 1965.811 kb on - strand at 1965.837 kb on + strand at 1965.837 kb on + strand at 1966.033 kb on - strand, within GFF4947 at 1966.389 kb on + strand, within GFF4947 at 1966.870 kb on + strand, within GFF4948 at 1966.870 kb on + strand, within GFF4948 at 1966.870 kb on + strand, within GFF4948 at 1966.871 kb on - strand, within GFF4948 at 1966.895 kb on - strand, within GFF4948 at 1966.895 kb on - strand, within GFF4948 at 1966.895 kb on - strand, within GFF4948 at 1966.903 kb on + strand, within GFF4948 at 1967.185 kb on + strand, within GFF4948 at 1967.185 kb on + strand, within GFF4948 at 1967.185 kb on + strand, within GFF4948 at 1967.192 kb on - strand, within GFF4948 at 1967.216 kb on - strand, within GFF4948 at 1967.216 kb on - strand, within GFF4948 at 1967.221 kb on + strand, within GFF4948 at 1967.221 kb on + strand, within GFF4948 at 1967.221 kb on + strand, within GFF4948 at 1967.222 kb on - strand, within GFF4948 at 1967.222 kb on - strand, within GFF4948 at 1967.222 kb on - strand, within GFF4948 at 1967.222 kb on - strand, within GFF4948 at 1967.222 kb on - strand, within GFF4948 at 1967.222 kb on - strand, within GFF4948 at 1967.354 kb on - strand, within GFF4948 at 1967.440 kb on + strand, within GFF4948 at 1967.440 kb on + strand, within GFF4948 at 1967.441 kb on - strand, within GFF4948 at 1967.450 kb on - strand, within GFF4948 at 1967.450 kb on - strand, within GFF4948 at 1967.450 kb on - strand, within GFF4948 at 1967.450 kb on - strand, within GFF4948 at 1967.524 kb on + strand, within GFF4948 at 1967.525 kb on - strand, within GFF4948 at 1967.815 kb on + strand at 1967.815 kb on + strand at 1967.815 kb on + strand at 1967.816 kb on - strand at 1967.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 1,965,785 + -0.2 1,965,785 + +0.4 1,965,786 - +0.0 1,965,786 - -1.1 1,965,786 - -0.5 1,965,810 + -0.1 1,965,810 + +0.7 1,965,810 + -0.0 1,965,811 - -1.2 1,965,837 + +0.4 1,965,837 + -0.6 1,966,033 - GFF4947 0.27 -0.6 1,966,389 + GFF4947 0.69 +1.2 1,966,870 + GFF4948 0.14 -0.2 1,966,870 + GFF4948 0.14 -0.2 1,966,870 + GFF4948 0.14 +0.6 1,966,871 - GFF4948 0.15 +0.5 1,966,895 - GFF4948 0.17 +0.3 1,966,895 - GFF4948 0.17 -0.3 1,966,895 - GFF4948 0.17 -0.2 1,966,903 + GFF4948 0.18 +0.0 1,967,185 + GFF4948 0.46 -0.7 1,967,185 + GFF4948 0.46 +0.0 1,967,185 + GFF4948 0.46 +0.4 1,967,192 - GFF4948 0.47 +0.1 1,967,216 - GFF4948 0.49 -0.2 1,967,216 - GFF4948 0.49 -0.1 1,967,221 + GFF4948 0.50 +0.1 1,967,221 + GFF4948 0.50 -0.6 1,967,221 + GFF4948 0.50 -0.1 1,967,222 - GFF4948 0.50 +0.0 1,967,222 - GFF4948 0.50 +0.2 1,967,222 - GFF4948 0.50 +0.1 1,967,222 - GFF4948 0.50 +0.9 1,967,222 - GFF4948 0.50 -0.2 1,967,222 - GFF4948 0.50 +0.5 1,967,354 - GFF4948 0.63 +0.2 1,967,440 + GFF4948 0.71 +0.3 1,967,440 + GFF4948 0.71 +1.2 1,967,441 - GFF4948 0.72 +0.8 1,967,450 - GFF4948 0.72 +1.1 1,967,450 - GFF4948 0.72 -0.3 1,967,450 - GFF4948 0.72 +0.1 1,967,450 - GFF4948 0.72 -0.0 1,967,524 + GFF4948 0.80 -0.1 1,967,525 - GFF4948 0.80 +0.1 1,967,815 + -0.2 1,967,815 + +0.6 1,967,815 + -1.1 1,967,816 - +0.2 1,967,816 - +0.2
Or see this region's nucleotide sequence