Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4894

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
1,907,216	-		GFF4892	0.89	-2.7
1,907,272	+				-1.4
1,907,272	+				-2.7
1,907,273	-				-1.8
1,907,284	+				-0.2
1,907,284	+				-2.2
1,907,284	+				-1.2
1,907,284	+				-1.5
1,907,284	+				-0.8
1,907,285	-				-2.0
1,907,285	-				-1.2
1,907,285	-				-2.8
1,907,285	-				-3.1
1,907,377	+				-1.7
1,907,377	+				-2.2
1,907,377	+				-1.7
1,907,377	+				-2.7
1,907,377	+				-2.4
1,907,377	+				-2.4
1,907,378	-				-1.2
1,907,378	-				-1.3
1,907,378	-				-2.2
1,907,378	-				-0.8
1,907,378	-				-2.6
1,907,378	-				-2.1
1,907,532	+				-2.4
1,907,532	+				-1.8
1,907,640	+		GFF4893	0.22	-0.8
1,907,641	-		GFF4893	0.22	-2.5
1,907,682	-		GFF4893	0.29	-4.4
1,909,080	-				-0.5
1,909,080	-				+0.5
1,909,367	+		GFF4895	0.35	+0.9
1,909,368	-		GFF4895	0.36	+0.6
1,909,484	+		GFF4895	0.50	+0.3
1,909,484	+		GFF4895	0.50	-0.2
1,909,485	-		GFF4895	0.50	-0.0
1,909,485	-		GFF4895	0.50	-0.2
1,909,485	-		GFF4895	0.50	+0.3
1,909,881	+				+0.4
1,909,881	+				-0.1
1,909,882	-				+0.4
1,909,912	+				+0.7
1,909,912	+				+0.3
1,909,913	-				-0.2
1,909,913	-				+0.5
1,910,046	+		GFF4896	0.25	+0.1