Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4409

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
1,338,435	+		GFF4408	0.22	-0.3
1,338,675	+		GFF4408	0.42	-0.2
1,338,675	+		GFF4408	0.42	-1.3
1,338,753	+		GFF4408	0.48	+2.0
1,338,754	-		GFF4408	0.48	+0.6
1,338,864	+		GFF4408	0.58	-0.3
1,338,864	+		GFF4408	0.58	-0.9
1,338,865	-		GFF4408	0.58	-1.5
1,338,865	-		GFF4408	0.58	-0.8
1,338,865	-		GFF4408	0.58	-0.7
1,338,865	-		GFF4408	0.58	+0.2
1,338,935	+		GFF4408	0.63	+0.0
1,338,936	-		GFF4408	0.63	-0.1
1,338,936	-		GFF4408	0.63	+0.0
1,339,002	-		GFF4408	0.69	+0.5
1,339,111	+		GFF4408	0.78	+0.5
1,339,112	-		GFF4408	0.78	+0.0
1,339,112	-		GFF4408	0.78	-0.1
1,339,112	-		GFF4408	0.78	+1.0
1,339,215	+		GFF4408	0.86	-0.8
1,339,218	+		GFF4408	0.87	-0.2
1,339,219	-		GFF4408	0.87	-0.1
1,339,242	+		GFF4408	0.89	+0.8
1,339,339	+				+0.3
1,339,339	+				-0.4
1,339,339	+				-0.1
1,339,339	+				+0.6
1,339,339	+				-0.1
1,339,339	+				-0.0
1,339,340	-				+0.1
1,339,460	-				-0.0
1,339,460	-				-0.1
1,339,460	-				-0.3
1,339,577	+				-0.2
1,339,578	-				-0.4
1,339,579	+				+1.0
1,339,580	-				-0.3
1,339,654	+		GFF4409	0.13	-1.4
1,339,654	+		GFF4409	0.13	+0.1
1,339,654	+		GFF4409	0.13	+0.5
1,339,654	+		GFF4409	0.13	+0.1
1,339,655	-		GFF4409	0.13	+0.1
1,339,707	-		GFF4409	0.15	+0.4
1,339,707	-		GFF4409	0.15	+1.1
1,339,707	-		GFF4409	0.15	+0.2
1,340,522	+		GFF4409	0.52	-0.4
1,340,523	-		GFF4409	0.52	-0.0
1,340,612	+		GFF4409	0.56	+0.6
1,340,612	+		GFF4409	0.56	-2.3
1,340,612	+		GFF4409	0.56	+1.1
1,340,613	-		GFF4409	0.56	+0.2
1,340,724	-		GFF4409	0.61	+0.9
1,340,724	-		GFF4409	0.61	-0.5
1,341,117	-		GFF4409	0.79	-0.2
1,341,117	-		GFF4409	0.79	+0.4
1,341,302	+		GFF4409	0.87	-0.1
1,341,410	+				+0.3
1,341,411	-				-0.5
1,341,411	-				+0.1
1,341,411	-				-0.5
1,341,562	-				-0.1
1,341,562	-				-0.3
1,341,562	-				+0.2
1,341,596	+				-0.5
1,341,597	-				-0.3
1,341,597	-				-0.6
1,341,616	+				+0.0
1,341,712	+				-0.1
1,341,747	+				+0.3
1,341,797	+				+0.1
1,341,820	+		GFF4410	0.11	-0.1
1,341,821	-		GFF4410	0.11	+0.2
1,341,854	+		GFF4410	0.14	-0.2
1,341,854	+		GFF4410	0.14	-0.2
1,341,854	+		GFF4410	0.14	-0.5
1,341,950	+		GFF4410	0.24	+0.2
1,341,950	+		GFF4410	0.24	-0.3
1,341,951	-		GFF4410	0.24	-0.5
1,342,040	+		GFF4410	0.33	+0.2
1,342,065	-		GFF4410	0.36	-0.2
1,342,178	+		GFF4410	0.48	+0.2
1,342,179	-		GFF4410	0.48	+0.1
1,342,179	-		GFF4410	0.48	-0.3
1,342,194	+		GFF4410	0.49	+0.5
1,342,265	+		GFF4410	0.57	-0.1
1,342,266	-		GFF4410	0.57	-0.5
1,342,266	-		GFF4410	0.57	+0.1
1,342,349	+		GFF4410	0.65	-0.2
1,342,349	+		GFF4410	0.65	+0.3
1,342,349	+		GFF4410	0.65	-0.1
1,342,349	+		GFF4410	0.65	-0.1
1,342,448	+		GFF4410	0.76	+0.0
1,342,468	-		GFF4410	0.78	-0.3