Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4292

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
1,216,829	+				-0.6
1,216,829	+				-0.5
1,216,830	-				-0.8
1,216,830	-				-0.9
1,216,990	-		GFF4291	0.25	-2.9
1,217,220	+		GFF4291	0.56	-2.2
1,217,220	+		GFF4291	0.56	-1.0
1,217,220	+		GFF4291	0.56	-2.4
1,217,220	+		GFF4291	0.56	-1.5
1,217,220	+		GFF4291	0.56	-1.7
1,217,221	-		GFF4291	0.56	-1.6
1,217,221	-		GFF4291	0.56	-2.0
1,217,532	+				-2.0
1,217,532	+				-2.6
1,217,532	+				-2.2
1,217,533	-				-1.1
1,217,533	-				-1.6
1,217,618	+		GFF4292	0.12	-3.5
1,217,630	+		GFF4292	0.16	-3.4
1,217,630	+		GFF4292	0.16	-1.8
1,218,091	+				-4.1
1,218,091	+				-2.2
1,218,091	+				-3.4
1,218,091	+				-1.3
1,218,092	-				-2.2
1,218,092	-				-1.8
1,218,092	-				-3.9
1,218,350	-		GFF4293	0.21	-2.1
1,218,878	-		GFF4293	0.51	-3.0
1,218,946	+		GFF4293	0.55	-2.2
1,218,946	+		GFF4293	0.55	-3.0
1,218,947	-		GFF4293	0.55	-1.7
1,218,947	-		GFF4293	0.55	-3.3
1,218,947	-		GFF4293	0.55	-2.3
1,218,947	-		GFF4293	0.55	-0.4