Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3932 and GFF3933 are separated by 182 nucleotides GFF3933 and GFF3934 are separated by 138 nucleotides GFF3934 and GFF3935 are separated by 18 nucleotides
GFF3932 - Thiol peroxidase, Bcp-type (EC 1.11.1.15), at 845,671 to 846,147
GFF3932
GFF3933 - membrane protein, putative, at 846,330 to 846,710
GFF3933
GFF3934 - Aspartate aminotransferase (EC 2.6.1.1), at 846,849 to 848,072
GFF3934
GFF3935 - Homoserine dehydrogenase (EC 1.1.1.3), at 848,091 to 849,422
GFF3935
Position (kb) 846
847
848
849 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 846.313 kb on + strand at 846.313 kb on + strand at 846.388 kb on + strand, within GFF3933 at 846.389 kb on - strand, within GFF3933 at 846.389 kb on - strand, within GFF3933 at 846.389 kb on - strand, within GFF3933 at 846.665 kb on - strand, within GFF3933 at 846.665 kb on - strand, within GFF3933 at 846.665 kb on - strand, within GFF3933 at 846.783 kb on + strand at 846.784 kb on - strand at 846.784 kb on - strand at 846.785 kb on + strand at 846.785 kb on + strand at 846.785 kb on + strand at 846.786 kb on - strand at 846.891 kb on + strand at 846.891 kb on + strand at 847.050 kb on + strand, within GFF3934 at 847.050 kb on + strand, within GFF3934 at 847.143 kb on + strand, within GFF3934 at 847.143 kb on + strand, within GFF3934 at 847.143 kb on + strand, within GFF3934 at 847.144 kb on - strand, within GFF3934 at 847.144 kb on - strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.284 kb on + strand, within GFF3934 at 847.285 kb on - strand, within GFF3934 at 847.402 kb on - strand, within GFF3934 at 847.477 kb on - strand, within GFF3934 at 847.477 kb on - strand, within GFF3934 at 847.491 kb on + strand, within GFF3934 at 847.491 kb on + strand, within GFF3934 at 847.492 kb on - strand, within GFF3934 at 847.492 kb on - strand, within GFF3934 at 847.572 kb on + strand, within GFF3934 at 847.573 kb on - strand, within GFF3934 at 847.638 kb on + strand, within GFF3934 at 847.638 kb on + strand, within GFF3934 at 847.638 kb on + strand, within GFF3934 at 847.638 kb on + strand, within GFF3934 at 847.639 kb on - strand, within GFF3934 at 847.846 kb on - strand, within GFF3934 at 847.846 kb on - strand, within GFF3934 at 847.846 kb on - strand, within GFF3934 at 847.875 kb on + strand, within GFF3934 at 847.875 kb on + strand, within GFF3934 at 847.959 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 846,313 + +0.4 846,313 + +0.0 846,388 + GFF3933 0.15 -0.9 846,389 - GFF3933 0.15 +0.4 846,389 - GFF3933 0.15 +1.1 846,389 - GFF3933 0.15 -0.5 846,665 - GFF3933 0.88 +0.4 846,665 - GFF3933 0.88 -0.1 846,665 - GFF3933 0.88 -1.4 846,783 + -0.8 846,784 - -0.8 846,784 - +0.5 846,785 + +0.6 846,785 + +0.5 846,785 + -0.1 846,786 - -0.5 846,891 + -1.8 846,891 + -2.6 847,050 + GFF3934 0.16 -2.3 847,050 + GFF3934 0.16 -2.0 847,143 + GFF3934 0.24 -1.2 847,143 + GFF3934 0.24 -0.9 847,143 + GFF3934 0.24 -2.2 847,144 - GFF3934 0.24 -1.8 847,144 - GFF3934 0.24 -1.9 847,284 + GFF3934 0.36 -1.6 847,284 + GFF3934 0.36 -1.8 847,284 + GFF3934 0.36 -2.7 847,284 + GFF3934 0.36 -2.3 847,284 + GFF3934 0.36 -2.8 847,284 + GFF3934 0.36 -1.6 847,284 + GFF3934 0.36 -0.9 847,284 + GFF3934 0.36 -1.3 847,285 - GFF3934 0.36 -1.2 847,402 - GFF3934 0.45 -3.4 847,477 - GFF3934 0.51 -1.9 847,477 - GFF3934 0.51 -1.6 847,491 + GFF3934 0.52 -1.5 847,491 + GFF3934 0.52 +0.4 847,492 - GFF3934 0.53 -1.3 847,492 - GFF3934 0.53 -2.9 847,572 + GFF3934 0.59 +0.2 847,573 - GFF3934 0.59 -1.6 847,638 + GFF3934 0.64 -0.2 847,638 + GFF3934 0.64 -1.8 847,638 + GFF3934 0.64 -2.4 847,638 + GFF3934 0.64 -1.2 847,639 - GFF3934 0.65 -1.9 847,846 - GFF3934 0.81 -2.4 847,846 - GFF3934 0.81 -1.8 847,846 - GFF3934 0.81 -1.3 847,875 + GFF3934 0.84 +0.4 847,875 + GFF3934 0.84 -2.1 847,959 + -1.0
Or see this region's nucleotide sequence