Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3923 and GFF3924 are separated by 221 nucleotides GFF3924 and GFF3925 are separated by 132 nucleotides GFF3925 and GFF3926 are separated by 40 nucleotides GFF3926 and GFF3927 are separated by 11 nucleotides
GFF3923 - Permeases of the major facilitator superfamily, at 838,070 to 839,752
GFF3923
GFF3924 - Probable proline-rich protein, at 839,974 to 840,438
GFF3924
GFF3925 - SSU ribosomal protein S6p, at 840,571 to 840,957
GFF3925
GFF3926 - Primosomal replication protein N, at 840,998 to 841,270
GFF3926
GFF3927 - SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent, at 841,282 to 841,563
GFF3927
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1 at 839.046 kb on - strand, within GFF3923 at 839.046 kb on - strand, within GFF3923 at 839.046 kb on - strand, within GFF3923 at 839.075 kb on + strand, within GFF3923 at 839.076 kb on - strand, within GFF3923 at 839.076 kb on - strand, within GFF3923 at 839.076 kb on - strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.228 kb on + strand, within GFF3923 at 839.229 kb on - strand, within GFF3923 at 839.238 kb on - strand, within GFF3923 at 839.498 kb on + strand, within GFF3923 at 839.499 kb on - strand, within GFF3923 at 839.499 kb on - strand, within GFF3923 at 839.499 kb on - strand, within GFF3923 at 839.549 kb on + strand, within GFF3923 at 839.549 kb on + strand, within GFF3923 at 839.549 kb on + strand, within GFF3923 at 839.550 kb on - strand, within GFF3923 at 839.571 kb on - strand, within GFF3923 at 839.571 kb on - strand, within GFF3923 at 839.651 kb on + strand at 839.651 kb on + strand at 839.651 kb on + strand at 839.651 kb on + strand at 839.652 kb on - strand at 839.652 kb on - strand at 839.652 kb on - strand at 839.652 kb on - strand at 839.738 kb on + strand at 839.738 kb on + strand at 839.738 kb on + strand at 839.739 kb on - strand at 839.739 kb on - strand at 839.739 kb on - strand at 839.739 kb on - strand at 839.739 kb on - strand at 839.739 kb on - strand at 839.845 kb on + strand at 839.847 kb on + strand at 839.848 kb on - strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.879 kb on + strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 839.880 kb on - strand at 840.265 kb on + strand, within GFF3924 at 840.266 kb on - strand, within GFF3924 at 840.266 kb on - strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on + strand, within GFF3924 at 840.346 kb on - strand, within GFF3924 at 840.347 kb on - strand, within GFF3924 at 840.347 kb on - strand, within GFF3924 at 840.347 kb on - strand, within GFF3924 at 840.347 kb on - strand, within GFF3924 at 840.471 kb on + strand at 840.472 kb on - strand at 840.472 kb on - strand at 841.034 kb on + strand, within GFF3926
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 839,046 - GFF3923 0.58 -0.2 839,046 - GFF3923 0.58 -1.6 839,046 - GFF3923 0.58 -0.7 839,075 + GFF3923 0.60 -0.4 839,076 - GFF3923 0.60 -0.9 839,076 - GFF3923 0.60 -0.0 839,076 - GFF3923 0.60 +0.4 839,228 + GFF3923 0.69 -1.9 839,228 + GFF3923 0.69 +0.8 839,228 + GFF3923 0.69 -0.2 839,228 + GFF3923 0.69 +0.3 839,228 + GFF3923 0.69 +0.4 839,228 + GFF3923 0.69 +0.4 839,228 + GFF3923 0.69 +0.5 839,228 + GFF3923 0.69 -1.2 839,228 + GFF3923 0.69 -0.1 839,228 + GFF3923 0.69 +0.7 839,229 - GFF3923 0.69 -0.9 839,238 - GFF3923 0.69 +0.8 839,498 + GFF3923 0.85 -0.2 839,499 - GFF3923 0.85 +0.1 839,499 - GFF3923 0.85 +0.6 839,499 - GFF3923 0.85 -0.1 839,549 + GFF3923 0.88 +0.1 839,549 + GFF3923 0.88 -0.4 839,549 + GFF3923 0.88 -0.6 839,550 - GFF3923 0.88 +0.0 839,571 - GFF3923 0.89 -0.6 839,571 - GFF3923 0.89 -0.2 839,651 + -0.3 839,651 + -0.4 839,651 + +0.3 839,651 + -0.6 839,652 - +0.9 839,652 - +0.3 839,652 - -0.3 839,652 - -0.0 839,738 + +0.2 839,738 + -0.4 839,738 + +1.2 839,739 - +0.3 839,739 - -0.4 839,739 - -1.1 839,739 - -0.0 839,739 - +0.1 839,739 - +0.1 839,845 + +0.1 839,847 + +0.9 839,848 - +1.1 839,879 + +0.6 839,879 + +1.4 839,879 + -0.2 839,879 + +0.2 839,879 + -1.9 839,879 + +0.5 839,879 + +1.0 839,879 + -0.6 839,880 - -0.4 839,880 - +0.5 839,880 - +1.2 839,880 - +0.5 839,880 - +0.1 839,880 - -0.1 839,880 - -0.6 839,880 - +0.1 839,880 - -0.2 840,265 + GFF3924 0.63 -0.2 840,266 - GFF3924 0.63 -0.2 840,266 - GFF3924 0.63 -0.8 840,346 + GFF3924 0.80 -0.4 840,346 + GFF3924 0.80 +0.3 840,346 + GFF3924 0.80 -0.3 840,346 + GFF3924 0.80 +1.1 840,346 + GFF3924 0.80 -0.3 840,346 + GFF3924 0.80 +0.4 840,346 - GFF3924 0.80 -0.3 840,347 - GFF3924 0.80 -0.6 840,347 - GFF3924 0.80 -0.3 840,347 - GFF3924 0.80 +0.6 840,347 - GFF3924 0.80 +0.7 840,471 + +0.2 840,472 - +0.0 840,472 - +0.6 841,034 + GFF3926 0.13 -2.1
Or see this region's nucleotide sequence