Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF364 and GFF365 are separated by 60 nucleotides GFF365 and GFF366 overlap by 4 nucleotides GFF366 and GFF367 overlap by 14 nucleotides
GFF364 - FIG00953527: hypothetical protein, at 26,526 to 27,074
GFF364
GFF365 - RNA polymerase sigma factor, at 27,135 to 27,701
GFF365
GFF366 - Probable transmembrane protein, at 27,698 to 28,399
GFF366
GFF367 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 28,386 to 30,659
GFF367
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1 at 26.698 kb on - strand, within GFF364 at 26.698 kb on - strand, within GFF364 at 26.698 kb on - strand, within GFF364 at 26.698 kb on - strand, within GFF364 at 26.799 kb on + strand, within GFF364 at 26.799 kb on + strand, within GFF364 at 26.800 kb on - strand, within GFF364 at 26.800 kb on - strand, within GFF364 at 26.800 kb on - strand, within GFF364 at 26.802 kb on + strand, within GFF364 at 26.802 kb on + strand, within GFF364 at 26.803 kb on - strand, within GFF364 at 26.952 kb on + strand, within GFF364 at 26.952 kb on + strand, within GFF364 at 26.952 kb on + strand, within GFF364 at 26.953 kb on - strand, within GFF364 at 26.953 kb on - strand, within GFF364 at 27.061 kb on - strand at 27.097 kb on - strand at 27.375 kb on + strand, within GFF365 at 27.375 kb on + strand, within GFF365 at 27.375 kb on + strand, within GFF365 at 27.375 kb on + strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.376 kb on - strand, within GFF365 at 27.582 kb on + strand, within GFF365 at 27.582 kb on + strand, within GFF365 at 27.583 kb on - strand, within GFF365 at 27.583 kb on - strand, within GFF365 at 27.737 kb on + strand at 27.738 kb on - strand at 27.738 kb on - strand at 28.067 kb on + strand, within GFF366 at 28.067 kb on + strand, within GFF366 at 28.068 kb on - strand, within GFF366 at 28.370 kb on + strand at 28.615 kb on + strand, within GFF367 at 28.615 kb on + strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.616 kb on - strand, within GFF367 at 28.637 kb on - strand, within GFF367 at 29.075 kb on - strand, within GFF367 at 29.251 kb on + strand, within GFF367 at 29.252 kb on - strand, within GFF367
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 26,698 - GFF364 0.31 -0.5 26,698 - GFF364 0.31 +0.3 26,698 - GFF364 0.31 +0.3 26,698 - GFF364 0.31 -0.3 26,799 + GFF364 0.50 +1.5 26,799 + GFF364 0.50 +0.3 26,800 - GFF364 0.50 -0.0 26,800 - GFF364 0.50 +1.3 26,800 - GFF364 0.50 -0.6 26,802 + GFF364 0.50 +0.5 26,802 + GFF364 0.50 +0.5 26,803 - GFF364 0.50 -0.0 26,952 + GFF364 0.78 +0.5 26,952 + GFF364 0.78 -0.0 26,952 + GFF364 0.78 +0.5 26,953 - GFF364 0.78 -0.5 26,953 - GFF364 0.78 -0.3 27,061 - -0.0 27,097 - +0.7 27,375 + GFF365 0.42 +0.2 27,375 + GFF365 0.42 +0.1 27,375 + GFF365 0.42 +0.6 27,375 + GFF365 0.42 -1.1 27,376 - GFF365 0.43 -0.3 27,376 - GFF365 0.43 -0.7 27,376 - GFF365 0.43 +0.1 27,376 - GFF365 0.43 +0.1 27,376 - GFF365 0.43 +0.7 27,376 - GFF365 0.43 +0.0 27,582 + GFF365 0.79 +0.3 27,582 + GFF365 0.79 -0.9 27,583 - GFF365 0.79 +0.0 27,583 - GFF365 0.79 -0.3 27,737 + +0.1 27,738 - +0.1 27,738 - -0.4 28,067 + GFF366 0.53 -0.0 28,067 + GFF366 0.53 -1.0 28,068 - GFF366 0.53 -1.3 28,370 + -0.5 28,615 + GFF367 0.10 -0.9 28,615 + GFF367 0.10 +0.2 28,616 - GFF367 0.10 -0.4 28,616 - GFF367 0.10 -0.2 28,616 - GFF367 0.10 +0.1 28,616 - GFF367 0.10 +0.2 28,616 - GFF367 0.10 +1.4 28,637 - GFF367 0.11 -0.4 29,075 - GFF367 0.30 +0.7 29,251 + GFF367 0.38 +0.5 29,252 - GFF367 0.38 -0.1
Or see this region's nucleotide sequence