Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3567 and GFF3568 are separated by 3 nucleotides GFF3568 and GFF3569 are separated by 10 nucleotides GFF3569 and GFF3570 are separated by 104 nucleotides GFF3570 and GFF3571 are separated by 47 nucleotides GFF3571 and GFF3572 are separated by 109 nucleotides
GFF3567 - NAD(P)H dehydrogenase, quinone family, at 457,838 to 458,431
GFF3567
GFF3568 - protein of unknown function DUF427, at 458,435 to 458,716
GFF3568
GFF3569 - hypothetical protein, at 458,727 to 458,867
GFF3569
GFF3570 - Thiol:disulfide interchange protein DsbG precursor, at 458,972 to 459,616
GFF3570
GFF3571 - Probable transmembrane protein, at 459,664 to 460,134
GFF3571
GFF3572 - protein of unknown function DUF1332, at 460,244 to 460,735
GFF3572
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.259 kb on - strand, within GFF3567 at 458.267 kb on + strand, within GFF3567 at 458.268 kb on - strand, within GFF3567 at 458.268 kb on - strand, within GFF3567 at 458.511 kb on + strand, within GFF3568 at 458.511 kb on + strand, within GFF3568 at 458.511 kb on + strand, within GFF3568 at 458.512 kb on - strand, within GFF3568 at 458.560 kb on - strand, within GFF3568 at 458.562 kb on + strand, within GFF3568 at 458.562 kb on + strand, within GFF3568 at 458.646 kb on + strand, within GFF3568 at 458.646 kb on + strand, within GFF3568 at 458.646 kb on + strand, within GFF3568 at 458.646 kb on + strand, within GFF3568 at 458.646 kb on + strand, within GFF3568 at 458.646 kb on - strand, within GFF3568 at 458.647 kb on - strand, within GFF3568 at 458.647 kb on - strand, within GFF3568 at 458.647 kb on - strand, within GFF3568 at 458.914 kb on + strand at 458.914 kb on + strand at 458.914 kb on + strand at 458.915 kb on - strand at 458.915 kb on - strand at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.370 kb on - strand, within GFF3570 at 459.370 kb on - strand, within GFF3570 at 459.720 kb on - strand, within GFF3571 at 459.720 kb on - strand, within GFF3571 at 459.764 kb on + strand, within GFF3571 at 459.765 kb on - strand, within GFF3571 at 459.765 kb on - strand, within GFF3571 at 459.797 kb on + strand, within GFF3571 at 459.797 kb on + strand, within GFF3571 at 459.798 kb on - strand, within GFF3571 at 459.798 kb on - strand, within GFF3571 at 459.827 kb on + strand, within GFF3571 at 459.863 kb on + strand, within GFF3571 at 459.863 kb on + strand, within GFF3571 at 459.864 kb on - strand, within GFF3571 at 459.864 kb on - strand, within GFF3571 at 459.864 kb on - strand, within GFF3571 at 459.865 kb on + strand, within GFF3571 at 459.866 kb on + strand, within GFF3571 at 459.866 kb on + strand, within GFF3571 at 459.867 kb on - strand, within GFF3571 at 459.867 kb on - strand, within GFF3571 at 459.867 kb on - strand, within GFF3571 at 459.869 kb on + strand, within GFF3571 at 459.869 kb on + strand, within GFF3571 at 459.870 kb on - strand, within GFF3571 at 459.870 kb on - strand, within GFF3571 at 459.870 kb on - strand, within GFF3571 at 459.879 kb on - strand, within GFF3571 at 459.879 kb on - strand, within GFF3571 at 459.984 kb on - strand, within GFF3571 at 460.302 kb on + strand, within GFF3572 at 460.302 kb on + strand, within GFF3572 at 460.302 kb on + strand, within GFF3572 at 460.302 kb on + strand, within GFF3572 at 460.302 kb on + strand, within GFF3572 at 460.302 kb on + strand, within GFF3572 at 460.303 kb on - strand, within GFF3572 at 460.474 kb on - strand, within GFF3572
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 458,259 - GFF3567 0.71 -0.5 458,267 + GFF3567 0.72 +0.1 458,268 - GFF3567 0.72 +0.8 458,268 - GFF3567 0.72 -0.4 458,511 + GFF3568 0.27 -0.4 458,511 + GFF3568 0.27 +0.0 458,511 + GFF3568 0.27 -0.6 458,512 - GFF3568 0.27 +0.2 458,560 - GFF3568 0.44 +0.7 458,562 + GFF3568 0.45 +0.8 458,562 + GFF3568 0.45 +0.5 458,646 + GFF3568 0.75 +0.4 458,646 + GFF3568 0.75 -0.0 458,646 + GFF3568 0.75 -0.3 458,646 + GFF3568 0.75 -0.0 458,646 + GFF3568 0.75 -0.1 458,646 - GFF3568 0.75 +0.4 458,647 - GFF3568 0.75 -0.8 458,647 - GFF3568 0.75 +2.7 458,647 - GFF3568 0.75 -2.1 458,914 + +0.0 458,914 + +0.7 458,914 + +0.7 458,915 - +0.3 458,915 - -1.0 459,369 + GFF3570 0.62 -0.2 459,369 + GFF3570 0.62 +0.2 459,369 + GFF3570 0.62 -0.1 459,369 + GFF3570 0.62 -1.1 459,369 + GFF3570 0.62 -1.5 459,369 + GFF3570 0.62 -0.4 459,369 + GFF3570 0.62 -0.8 459,370 - GFF3570 0.62 +0.0 459,370 - GFF3570 0.62 -0.3 459,720 - GFF3571 0.12 -0.1 459,720 - GFF3571 0.12 -0.3 459,764 + GFF3571 0.21 -1.8 459,765 - GFF3571 0.21 -0.3 459,765 - GFF3571 0.21 -0.1 459,797 + GFF3571 0.28 -0.2 459,797 + GFF3571 0.28 +0.0 459,798 - GFF3571 0.28 -0.0 459,798 - GFF3571 0.28 +1.4 459,827 + GFF3571 0.35 -0.1 459,863 + GFF3571 0.42 +0.4 459,863 + GFF3571 0.42 +0.1 459,864 - GFF3571 0.42 +0.2 459,864 - GFF3571 0.42 -0.5 459,864 - GFF3571 0.42 -0.6 459,865 + GFF3571 0.43 +0.6 459,866 + GFF3571 0.43 +0.4 459,866 + GFF3571 0.43 +1.4 459,867 - GFF3571 0.43 +0.1 459,867 - GFF3571 0.43 -0.4 459,867 - GFF3571 0.43 -0.1 459,869 + GFF3571 0.44 -0.6 459,869 + GFF3571 0.44 +0.1 459,870 - GFF3571 0.44 +0.4 459,870 - GFF3571 0.44 -0.4 459,870 - GFF3571 0.44 -0.2 459,879 - GFF3571 0.46 -0.0 459,879 - GFF3571 0.46 -1.2 459,984 - GFF3571 0.68 -0.2 460,302 + GFF3572 0.12 +1.2 460,302 + GFF3572 0.12 +1.4 460,302 + GFF3572 0.12 -0.4 460,302 + GFF3572 0.12 -0.1 460,302 + GFF3572 0.12 -0.1 460,302 + GFF3572 0.12 +0.0 460,303 - GFF3572 0.12 +0.0 460,474 - GFF3572 0.47 -0.2
Or see this region's nucleotide sequence