Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3413 and GFF3414 are separated by 9 nucleotides GFF3414 and GFF3415 are separated by 2 nucleotides GFF3415 and GFF3416 overlap by 4 nucleotides GFF3416 and GFF3417 are separated by 80 nucleotides
GFF3413 - Rieske (2Fe-2S) protein, at 298,449 to 299,558
GFF3413
GFF3414 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 299,568 to 300,431
GFF3414
GFF3415 - Kynureninase (EC 3.7.1.3), at 300,434 to 301,720
GFF3415
GFF3416 - Kynurenine formamidase, bacterial (EC 3.5.1.9), at 301,717 to 302,346
GFF3416
GFF3417 - Ferredoxin, at 302,427 to 302,732
GFF3417
Position (kb) 300
301
302 Strain fitness (log2 ratio) -1
0
1
2 at 299.633 kb on - strand at 299.633 kb on - strand at 299.758 kb on + strand, within GFF3414 at 299.759 kb on - strand, within GFF3414 at 299.788 kb on + strand, within GFF3414 at 299.789 kb on - strand, within GFF3414 at 299.831 kb on - strand, within GFF3414 at 299.929 kb on + strand, within GFF3414 at 300.025 kb on + strand, within GFF3414 at 300.080 kb on - strand, within GFF3414 at 300.080 kb on - strand, within GFF3414 at 300.161 kb on - strand, within GFF3414 at 300.331 kb on + strand, within GFF3414 at 300.341 kb on - strand, within GFF3414 at 300.541 kb on - strand at 300.541 kb on - strand at 300.645 kb on + strand, within GFF3415 at 300.645 kb on + strand, within GFF3415 at 301.035 kb on + strand, within GFF3415 at 301.035 kb on + strand, within GFF3415 at 301.035 kb on + strand, within GFF3415 at 301.036 kb on - strand, within GFF3415 at 301.036 kb on - strand, within GFF3415 at 301.036 kb on - strand, within GFF3415 at 301.041 kb on + strand, within GFF3415 at 301.042 kb on - strand, within GFF3415 at 301.059 kb on + strand, within GFF3415 at 301.060 kb on - strand, within GFF3415 at 301.191 kb on + strand, within GFF3415 at 301.192 kb on - strand, within GFF3415 at 301.308 kb on + strand, within GFF3415 at 301.308 kb on + strand, within GFF3415 at 301.308 kb on + strand, within GFF3415 at 301.308 kb on + strand, within GFF3415 at 301.309 kb on - strand, within GFF3415 at 301.309 kb on - strand, within GFF3415 at 301.309 kb on - strand, within GFF3415 at 301.617 kb on + strand at 301.617 kb on + strand at 301.617 kb on + strand at 301.617 kb on + strand at 301.618 kb on - strand at 301.618 kb on - strand at 301.618 kb on - strand at 301.618 kb on - strand at 301.797 kb on - strand, within GFF3416 at 302.171 kb on + strand, within GFF3416 at 302.276 kb on + strand, within GFF3416 at 302.360 kb on + strand at 302.361 kb on - strand at 302.361 kb on - strand at 302.361 kb on - strand at 302.432 kb on + strand at 302.432 kb on + strand at 302.433 kb on - strand at 302.521 kb on + strand, within GFF3417 at 302.521 kb on + strand, within GFF3417 at 302.521 kb on + strand, within GFF3417 at 302.522 kb on - strand, within GFF3417 at 302.522 kb on - strand, within GFF3417 at 302.522 kb on - strand, within GFF3417 at 302.522 kb on - strand, within GFF3417 at 302.522 kb on - strand, within GFF3417 at 302.525 kb on + strand, within GFF3417 at 302.526 kb on - strand, within GFF3417
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 299,633 - -0.0 299,633 - +0.2 299,758 + GFF3414 0.22 +0.1 299,759 - GFF3414 0.22 +1.0 299,788 + GFF3414 0.25 -0.1 299,789 - GFF3414 0.26 +0.3 299,831 - GFF3414 0.30 -0.2 299,929 + GFF3414 0.42 +0.1 300,025 + GFF3414 0.53 -0.6 300,080 - GFF3414 0.59 -0.2 300,080 - GFF3414 0.59 +0.3 300,161 - GFF3414 0.69 -0.2 300,331 + GFF3414 0.88 +0.5 300,341 - GFF3414 0.89 -0.2 300,541 - +0.0 300,541 - +0.6 300,645 + GFF3415 0.16 -0.5 300,645 + GFF3415 0.16 -0.5 301,035 + GFF3415 0.47 -0.3 301,035 + GFF3415 0.47 -0.4 301,035 + GFF3415 0.47 -0.3 301,036 - GFF3415 0.47 +0.6 301,036 - GFF3415 0.47 +1.8 301,036 - GFF3415 0.47 -0.0 301,041 + GFF3415 0.47 -0.7 301,042 - GFF3415 0.47 +0.2 301,059 + GFF3415 0.49 +0.4 301,060 - GFF3415 0.49 -1.6 301,191 + GFF3415 0.59 +1.0 301,192 - GFF3415 0.59 -0.4 301,308 + GFF3415 0.68 +1.9 301,308 + GFF3415 0.68 -0.4 301,308 + GFF3415 0.68 +0.6 301,308 + GFF3415 0.68 -0.1 301,309 - GFF3415 0.68 -0.4 301,309 - GFF3415 0.68 +0.1 301,309 - GFF3415 0.68 -0.2 301,617 + -0.1 301,617 + +0.1 301,617 + -0.1 301,617 + +0.8 301,618 - -0.4 301,618 - +0.3 301,618 - -0.7 301,618 - -0.1 301,797 - GFF3416 0.13 -0.2 302,171 + GFF3416 0.72 -0.4 302,276 + GFF3416 0.89 -0.2 302,360 + +0.3 302,361 - +1.4 302,361 - -0.5 302,361 - -0.1 302,432 + +0.3 302,432 + -0.6 302,433 - -0.6 302,521 + GFF3417 0.31 -0.9 302,521 + GFF3417 0.31 -0.4 302,521 + GFF3417 0.31 -0.2 302,522 - GFF3417 0.31 -1.4 302,522 - GFF3417 0.31 +0.1 302,522 - GFF3417 0.31 -0.4 302,522 - GFF3417 0.31 +0.3 302,522 - GFF3417 0.31 +0.1 302,525 + GFF3417 0.32 -0.4 302,526 - GFF3417 0.32 +0.8
Or see this region's nucleotide sequence