Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3042 and GFF3043 are separated by 52 nucleotides GFF3043 and GFF3044 are separated by 17 nucleotides GFF3044 and GFF3045 are separated by 63 nucleotides
GFF3042 - Transcriptional regulator, IclR family, at 122,849 to 123,643
GFF3042
GFF3043 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 123,696 to 124,619
GFF3043
GFF3044 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 124,637 to 125,851
GFF3044
GFF3045 - Transcriptional regulator, LysR family, at 125,915 to 126,841
GFF3045
Position (kb) 124
125
126 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 123.645 kb on - strand at 123.685 kb on + strand at 123.686 kb on - strand at 123.686 kb on - strand at 123.686 kb on - strand at 123.688 kb on - strand at 123.688 kb on - strand at 124.146 kb on - strand, within GFF3043 at 124.368 kb on + strand, within GFF3043 at 124.368 kb on + strand, within GFF3043 at 124.369 kb on - strand, within GFF3043 at 124.569 kb on + strand at 124.826 kb on + strand, within GFF3044 at 124.826 kb on + strand, within GFF3044 at 125.009 kb on + strand, within GFF3044 at 125.009 kb on + strand, within GFF3044 at 125.009 kb on + strand, within GFF3044 at 125.010 kb on - strand, within GFF3044 at 125.010 kb on - strand, within GFF3044 at 125.010 kb on - strand, within GFF3044 at 125.010 kb on - strand, within GFF3044 at 125.042 kb on + strand, within GFF3044 at 125.096 kb on + strand, within GFF3044 at 125.096 kb on + strand, within GFF3044 at 125.097 kb on - strand, within GFF3044 at 125.097 kb on - strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.346 kb on - strand, within GFF3044 at 125.346 kb on - strand, within GFF3044 at 125.799 kb on - strand at 125.799 kb on - strand at 125.799 kb on - strand at 125.871 kb on + strand at 126.560 kb on + strand, within GFF3045 at 126.812 kb on + strand at 126.812 kb on + strand at 126.812 kb on + strand at 126.813 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 123,645 - +4.1 123,685 + +0.8 123,686 - +0.2 123,686 - +0.2 123,686 - -0.9 123,688 - -0.1 123,688 - +0.4 124,146 - GFF3043 0.49 -1.4 124,368 + GFF3043 0.73 -0.3 124,368 + GFF3043 0.73 -2.1 124,369 - GFF3043 0.73 +0.4 124,569 + +0.1 124,826 + GFF3044 0.16 -0.0 124,826 + GFF3044 0.16 +0.4 125,009 + GFF3044 0.31 -0.5 125,009 + GFF3044 0.31 +1.2 125,009 + GFF3044 0.31 -0.1 125,010 - GFF3044 0.31 +0.4 125,010 - GFF3044 0.31 -0.6 125,010 - GFF3044 0.31 +0.5 125,010 - GFF3044 0.31 +0.0 125,042 + GFF3044 0.33 -1.2 125,096 + GFF3044 0.38 +0.5 125,096 + GFF3044 0.38 -0.5 125,097 - GFF3044 0.38 -0.2 125,097 - GFF3044 0.38 +0.6 125,345 + GFF3044 0.58 +0.6 125,345 + GFF3044 0.58 +1.2 125,345 + GFF3044 0.58 +0.5 125,345 + GFF3044 0.58 -1.1 125,345 + GFF3044 0.58 +0.1 125,345 + GFF3044 0.58 +0.3 125,346 - GFF3044 0.58 +0.0 125,346 - GFF3044 0.58 +0.2 125,799 - -1.6 125,799 - +0.3 125,799 - +0.6 125,871 + +0.4 126,560 + GFF3045 0.70 +0.0 126,812 + -0.8 126,812 + -0.1 126,812 + +0.1 126,813 - +0.4
Or see this region's nucleotide sequence