Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2992 and GFF2993 are separated by 16 nucleotides GFF2993 and GFF2994 are separated by 135 nucleotides GFF2994 and GFF2995 overlap by 20 nucleotides GFF2995 and GFF2996 are separated by 55 nucleotides GFF2996 and GFF2997 are separated by 15 nucleotides
GFF2992 - D-hydantoinase (EC 3.5.2.2), at 72,112 to 73,542
GFF2992
GFF2993 - bll1134; hypothetical protein, at 73,559 to 74,047
GFF2993
GFF2994 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 74,183 to 75,727
GFF2994
GFF2995 - phosphoesterase, PA-phosphatase related, at 75,708 to 76,367
GFF2995
GFF2996 - hypothetical protein, at 76,423 to 76,596
GFF2996
GFF2997 - hypothetical protein, at 76,612 to 76,851
GFF2997
Position (kb) 74
75
76 Strain fitness (log2 ratio) -2
-1
0
1 at 73.183 kb on + strand, within GFF2992 at 73.183 kb on + strand, within GFF2992 at 73.184 kb on - strand, within GFF2992 at 73.262 kb on - strand, within GFF2992 at 73.375 kb on + strand, within GFF2992 at 73.376 kb on - strand, within GFF2992 at 73.376 kb on - strand, within GFF2992 at 73.384 kb on + strand, within GFF2992 at 73.385 kb on - strand, within GFF2992 at 73.443 kb on - strand at 73.487 kb on - strand at 73.540 kb on + strand at 73.541 kb on - strand at 73.560 kb on + strand at 73.560 kb on + strand at 73.561 kb on - strand at 73.563 kb on + strand at 73.564 kb on - strand at 73.564 kb on - strand at 73.677 kb on + strand, within GFF2993 at 73.678 kb on - strand, within GFF2993 at 73.678 kb on - strand, within GFF2993 at 73.812 kb on + strand, within GFF2993 at 73.812 kb on + strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.813 kb on - strand, within GFF2993 at 73.968 kb on + strand, within GFF2993 at 74.163 kb on - strand at 74.651 kb on + strand, within GFF2994 at 74.651 kb on + strand, within GFF2994 at 74.652 kb on - strand, within GFF2994 at 74.696 kb on + strand, within GFF2994 at 74.697 kb on - strand, within GFF2994 at 74.697 kb on - strand, within GFF2994 at 74.697 kb on - strand, within GFF2994 at 74.697 kb on - strand, within GFF2994 at 74.697 kb on - strand, within GFF2994 at 76.135 kb on + strand, within GFF2995 at 76.135 kb on + strand, within GFF2995 at 76.135 kb on + strand, within GFF2995 at 76.136 kb on - strand, within GFF2995 at 76.136 kb on - strand, within GFF2995 at 76.136 kb on - strand, within GFF2995 at 76.136 kb on - strand, within GFF2995 at 76.154 kb on - strand, within GFF2995 at 76.154 kb on - strand, within GFF2995 at 76.159 kb on + strand, within GFF2995 at 76.159 kb on + strand, within GFF2995 at 76.159 kb on + strand, within GFF2995 at 76.159 kb on + strand, within GFF2995 at 76.160 kb on - strand, within GFF2995 at 76.160 kb on - strand, within GFF2995 at 76.160 kb on - strand, within GFF2995 at 76.160 kb on - strand, within GFF2995 at 76.160 kb on - strand, within GFF2995 at 76.252 kb on + strand, within GFF2995 at 76.253 kb on - strand, within GFF2995 at 76.303 kb on + strand at 76.304 kb on - strand at 76.408 kb on + strand at 76.408 kb on + strand at 76.408 kb on + strand at 76.409 kb on - strand at 76.409 kb on - strand at 76.409 kb on - strand at 76.409 kb on - strand at 76.409 kb on - strand at 76.449 kb on + strand, within GFF2996 at 76.449 kb on + strand, within GFF2996 at 76.449 kb on + strand, within GFF2996 at 76.449 kb on + strand, within GFF2996 at 76.450 kb on - strand, within GFF2996 at 76.501 kb on - strand, within GFF2996
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 73,183 + GFF2992 0.75 +0.2 73,183 + GFF2992 0.75 -0.5 73,184 - GFF2992 0.75 +0.7 73,262 - GFF2992 0.80 +0.8 73,375 + GFF2992 0.88 +0.1 73,376 - GFF2992 0.88 +0.4 73,376 - GFF2992 0.88 -0.1 73,384 + GFF2992 0.89 +0.4 73,385 - GFF2992 0.89 +0.3 73,443 - +0.5 73,487 - -0.2 73,540 + -0.5 73,541 - +0.9 73,560 + -0.0 73,560 + -0.3 73,561 - +0.1 73,563 + -1.3 73,564 - -0.4 73,564 - +1.1 73,677 + GFF2993 0.24 -1.0 73,678 - GFF2993 0.24 +0.5 73,678 - GFF2993 0.24 -0.4 73,812 + GFF2993 0.52 -0.2 73,812 + GFF2993 0.52 +0.4 73,813 - GFF2993 0.52 +1.3 73,813 - GFF2993 0.52 +1.3 73,813 - GFF2993 0.52 +0.2 73,813 - GFF2993 0.52 +0.2 73,968 + GFF2993 0.84 +0.1 74,163 - -0.3 74,651 + GFF2994 0.30 -0.8 74,651 + GFF2994 0.30 -0.6 74,652 - GFF2994 0.30 +0.0 74,696 + GFF2994 0.33 +0.8 74,697 - GFF2994 0.33 +0.3 74,697 - GFF2994 0.33 -0.0 74,697 - GFF2994 0.33 -0.4 74,697 - GFF2994 0.33 +0.0 74,697 - GFF2994 0.33 -0.6 76,135 + GFF2995 0.65 +1.2 76,135 + GFF2995 0.65 -0.3 76,135 + GFF2995 0.65 -0.7 76,136 - GFF2995 0.65 +0.1 76,136 - GFF2995 0.65 +0.5 76,136 - GFF2995 0.65 +0.2 76,136 - GFF2995 0.65 -0.0 76,154 - GFF2995 0.68 -0.0 76,154 - GFF2995 0.68 -0.1 76,159 + GFF2995 0.68 -1.4 76,159 + GFF2995 0.68 +0.4 76,159 + GFF2995 0.68 -1.4 76,159 + GFF2995 0.68 -1.3 76,160 - GFF2995 0.68 -1.5 76,160 - GFF2995 0.68 -0.4 76,160 - GFF2995 0.68 +0.5 76,160 - GFF2995 0.68 +0.5 76,160 - GFF2995 0.68 +0.3 76,252 + GFF2995 0.82 +0.1 76,253 - GFF2995 0.83 -1.9 76,303 + -0.1 76,304 - -1.2 76,408 + +0.6 76,408 + -1.5 76,408 + -0.9 76,409 - -0.3 76,409 - -0.1 76,409 - -0.4 76,409 - +1.3 76,409 - +0.5 76,449 + GFF2996 0.15 -2.5 76,449 + GFF2996 0.15 -1.0 76,449 + GFF2996 0.15 -0.3 76,449 + GFF2996 0.15 +0.0 76,450 - GFF2996 0.16 +0.8 76,501 - GFF2996 0.45 -0.5
Or see this region's nucleotide sequence