Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2928 and GFF2929 are separated by 9 nucleotides GFF2929 and GFF2930 overlap by 32 nucleotides GFF2930 and GFF2931 overlap by 4 nucleotides GFF2931 and GFF2932 overlap by 4 nucleotides
GFF2928 - putative membrane transport protein, at 11,903 to 13,138
GFF2928
GFF2929 - Sugar transport PTS system IIa component, at 13,148 to 13,594
GFF2929
GFF2930 - Phosphotransferase system, phosphocarrier protein HPr, at 13,563 to 13,832
GFF2930
GFF2931 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 13,829 to 15,583
GFF2931
GFF2932 - putative membrane protein, at 15,580 to 16,533
GFF2932
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.851 kb on + strand, within GFF2928 at 12.851 kb on + strand, within GFF2928 at 12.852 kb on - strand, within GFF2928 at 12.852 kb on - strand, within GFF2928 at 12.941 kb on + strand, within GFF2928 at 12.941 kb on + strand, within GFF2928 at 12.941 kb on + strand, within GFF2928 at 12.942 kb on - strand, within GFF2928 at 13.085 kb on + strand at 13.085 kb on + strand at 13.085 kb on + strand at 13.085 kb on + strand at 13.085 kb on + strand at 13.086 kb on - strand at 13.086 kb on - strand at 13.086 kb on - strand at 13.086 kb on - strand at 13.086 kb on - strand at 13.086 kb on - strand at 13.137 kb on - strand at 13.137 kb on - strand at 13.592 kb on + strand at 13.592 kb on + strand at 13.592 kb on + strand at 13.592 kb on + strand at 13.592 kb on + strand at 13.593 kb on - strand at 13.593 kb on - strand at 13.593 kb on - strand at 13.593 kb on - strand at 13.922 kb on + strand at 13.922 kb on + strand at 13.923 kb on - strand at 13.923 kb on - strand at 13.923 kb on - strand at 14.141 kb on + strand, within GFF2931 at 14.141 kb on + strand, within GFF2931 at 14.141 kb on + strand, within GFF2931 at 14.141 kb on + strand, within GFF2931 at 14.141 kb on + strand, within GFF2931 at 14.142 kb on - strand, within GFF2931 at 14.142 kb on - strand, within GFF2931 at 14.142 kb on - strand, within GFF2931 at 14.142 kb on - strand, within GFF2931 at 14.214 kb on - strand, within GFF2931 at 14.214 kb on - strand, within GFF2931 at 14.214 kb on - strand, within GFF2931 at 14.594 kb on + strand, within GFF2931 at 14.822 kb on + strand, within GFF2931 at 14.822 kb on + strand, within GFF2931 at 14.822 kb on + strand, within GFF2931 at 14.823 kb on - strand, within GFF2931 at 14.823 kb on - strand, within GFF2931 at 14.831 kb on + strand, within GFF2931 at 15.150 kb on - strand, within GFF2931 at 15.263 kb on + strand, within GFF2931 at 15.264 kb on - strand, within GFF2931 at 15.264 kb on - strand, within GFF2931 at 15.264 kb on - strand, within GFF2931 at 15.264 kb on - strand, within GFF2931 at 15.308 kb on + strand, within GFF2931 at 15.308 kb on + strand, within GFF2931 at 15.308 kb on + strand, within GFF2931 at 15.308 kb on + strand, within GFF2931 at 15.309 kb on - strand, within GFF2931 at 15.309 kb on - strand, within GFF2931 at 15.581 kb on + strand at 15.581 kb on + strand at 15.581 kb on + strand at 15.581 kb on + strand at 15.581 kb on + strand at 15.582 kb on - strand at 15.582 kb on - strand at 15.582 kb on - strand at 15.582 kb on - strand at 15.582 kb on - strand at 15.582 kb on - strand at 15.673 kb on + strand at 15.673 kb on + strand at 15.674 kb on - strand at 15.674 kb on - strand at 15.674 kb on - strand at 15.707 kb on + strand, within GFF2932 at 15.708 kb on - strand, within GFF2932 at 15.708 kb on - strand, within GFF2932 at 15.708 kb on - strand, within GFF2932 at 16.007 kb on + strand, within GFF2932 at 16.007 kb on + strand, within GFF2932 at 16.008 kb on - strand, within GFF2932 at 16.008 kb on - strand, within GFF2932 at 16.008 kb on - strand, within GFF2932 at 16.008 kb on - strand, within GFF2932 at 16.008 kb on - strand, within GFF2932 at 16.008 kb on - strand, within GFF2932 at 16.008 kb on - strand, within GFF2932 at 16.008 kb on - strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.274 kb on + strand, within GFF2932 at 16.275 kb on - strand, within GFF2932 at 16.275 kb on - strand, within GFF2932 at 16.275 kb on - strand, within GFF2932 at 16.275 kb on - strand, within GFF2932 at 16.275 kb on - strand, within GFF2932 at 16.275 kb on - strand, within GFF2932 at 16.275 kb on - strand, within GFF2932 at 16.275 kb on - strand, within GFF2932 at 16.275 kb on - strand, within GFF2932 at 16.277 kb on + strand, within GFF2932 at 16.277 kb on + strand, within GFF2932 at 16.277 kb on + strand, within GFF2932 at 16.277 kb on + strand, within GFF2932 at 16.277 kb on + strand, within GFF2932 at 16.277 kb on + strand, within GFF2932 at 16.277 kb on + strand, within GFF2932 at 16.277 kb on + strand, within GFF2932 at 16.277 kb on + strand, within GFF2932 at 16.277 kb on + strand, within GFF2932 at 16.278 kb on - strand, within GFF2932 at 16.278 kb on - strand, within GFF2932 at 16.278 kb on - strand, within GFF2932 at 16.278 kb on - strand, within GFF2932 at 16.278 kb on - strand, within GFF2932 at 16.278 kb on - strand, within GFF2932 at 16.391 kb on + strand, within GFF2932 at 16.392 kb on - strand, within GFF2932 at 16.392 kb on - strand, within GFF2932 at 16.392 kb on - strand, within GFF2932 at 16.401 kb on - strand, within GFF2932 at 16.401 kb on - strand, within GFF2932 at 16.574 kb on + strand at 16.574 kb on + strand at 16.575 kb on - strand at 16.575 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 12,851 + GFF2928 0.77 +0.1 12,851 + GFF2928 0.77 -0.1 12,852 - GFF2928 0.77 +0.3 12,852 - GFF2928 0.77 +0.4 12,941 + GFF2928 0.84 -0.3 12,941 + GFF2928 0.84 +1.9 12,941 + GFF2928 0.84 -0.7 12,942 - GFF2928 0.84 -0.2 13,085 + +0.1 13,085 + +0.9 13,085 + +0.3 13,085 + -0.3 13,085 + -0.7 13,086 - +0.3 13,086 - -1.2 13,086 - -0.6 13,086 - -0.3 13,086 - -0.5 13,086 - +0.1 13,137 - -1.3 13,137 - -0.3 13,592 + -1.2 13,592 + -0.5 13,592 + -0.1 13,592 + -1.4 13,592 + +0.2 13,593 - -2.3 13,593 - -1.0 13,593 - -1.8 13,593 - -0.6 13,922 + +0.1 13,922 + -0.6 13,923 - -0.9 13,923 - -0.6 13,923 - -0.5 14,141 + GFF2931 0.18 -1.1 14,141 + GFF2931 0.18 -0.6 14,141 + GFF2931 0.18 -1.6 14,141 + GFF2931 0.18 -1.3 14,141 + GFF2931 0.18 -1.3 14,142 - GFF2931 0.18 -1.3 14,142 - GFF2931 0.18 -1.3 14,142 - GFF2931 0.18 -0.6 14,142 - GFF2931 0.18 -0.9 14,214 - GFF2931 0.22 -0.8 14,214 - GFF2931 0.22 -1.3 14,214 - GFF2931 0.22 -1.0 14,594 + GFF2931 0.44 -0.9 14,822 + GFF2931 0.57 -0.7 14,822 + GFF2931 0.57 -1.6 14,822 + GFF2931 0.57 +0.1 14,823 - GFF2931 0.57 -0.5 14,823 - GFF2931 0.57 -2.0 14,831 + GFF2931 0.57 -1.2 15,150 - GFF2931 0.75 -1.0 15,263 + GFF2931 0.82 -1.4 15,264 - GFF2931 0.82 +0.5 15,264 - GFF2931 0.82 -3.0 15,264 - GFF2931 0.82 -0.9 15,264 - GFF2931 0.82 -0.9 15,308 + GFF2931 0.84 +0.0 15,308 + GFF2931 0.84 -1.5 15,308 + GFF2931 0.84 -0.8 15,308 + GFF2931 0.84 +0.1 15,309 - GFF2931 0.84 -0.8 15,309 - GFF2931 0.84 -0.7 15,581 + -0.5 15,581 + +0.6 15,581 + +0.3 15,581 + +0.4 15,581 + -1.0 15,582 - +0.0 15,582 - +0.2 15,582 - -0.4 15,582 - +0.6 15,582 - +0.4 15,582 - +0.8 15,673 + -0.9 15,673 + +0.7 15,674 - -0.0 15,674 - -0.5 15,674 - +0.0 15,707 + GFF2932 0.13 -0.2 15,708 - GFF2932 0.13 +0.2 15,708 - GFF2932 0.13 -0.0 15,708 - GFF2932 0.13 +0.4 16,007 + GFF2932 0.45 +0.3 16,007 + GFF2932 0.45 +0.2 16,008 - GFF2932 0.45 +0.4 16,008 - GFF2932 0.45 +0.2 16,008 - GFF2932 0.45 +0.3 16,008 - GFF2932 0.45 +0.2 16,008 - GFF2932 0.45 +1.0 16,008 - GFF2932 0.45 +0.5 16,008 - GFF2932 0.45 -0.3 16,008 - GFF2932 0.45 -0.5 16,274 + GFF2932 0.73 -0.5 16,274 + GFF2932 0.73 -0.2 16,274 + GFF2932 0.73 -0.6 16,274 + GFF2932 0.73 +0.6 16,274 + GFF2932 0.73 +0.1 16,274 + GFF2932 0.73 +1.0 16,274 + GFF2932 0.73 +0.1 16,274 + GFF2932 0.73 -1.0 16,274 + GFF2932 0.73 +0.1 16,274 + GFF2932 0.73 +0.0 16,274 + GFF2932 0.73 -0.2 16,274 + GFF2932 0.73 +1.4 16,275 - GFF2932 0.73 +0.0 16,275 - GFF2932 0.73 +0.1 16,275 - GFF2932 0.73 +0.1 16,275 - GFF2932 0.73 -1.1 16,275 - GFF2932 0.73 +0.0 16,275 - GFF2932 0.73 -0.2 16,275 - GFF2932 0.73 +0.3 16,275 - GFF2932 0.73 -0.1 16,275 - GFF2932 0.73 -0.4 16,277 + GFF2932 0.73 -0.1 16,277 + GFF2932 0.73 -0.3 16,277 + GFF2932 0.73 -0.4 16,277 + GFF2932 0.73 -0.6 16,277 + GFF2932 0.73 -0.7 16,277 + GFF2932 0.73 +0.2 16,277 + GFF2932 0.73 -0.6 16,277 + GFF2932 0.73 +0.2 16,277 + GFF2932 0.73 +0.9 16,277 + GFF2932 0.73 +0.9 16,278 - GFF2932 0.73 +0.5 16,278 - GFF2932 0.73 +0.1 16,278 - GFF2932 0.73 -0.3 16,278 - GFF2932 0.73 -0.5 16,278 - GFF2932 0.73 +0.0 16,278 - GFF2932 0.73 -0.4 16,391 + GFF2932 0.85 -0.0 16,392 - GFF2932 0.85 -0.2 16,392 - GFF2932 0.85 +0.2 16,392 - GFF2932 0.85 -0.3 16,401 - GFF2932 0.86 +0.5 16,401 - GFF2932 0.86 -0.6 16,574 + -0.7 16,574 + -0.0 16,575 - +0.3 16,575 - +0.1
Or see this region's nucleotide sequence