Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2683 and GFF2684 are separated by 152 nucleotides GFF2684 and GFF2685 overlap by 31 nucleotides GFF2685 and GFF2686 are separated by 7 nucleotides
GFF2683 - hypothetical protein, at 274,945 to 275,103
GFF2683
GFF2684 - hypothetical protein, at 275,256 to 275,990
GFF2684
GFF2685 - Choline-sulfatase (EC 3.1.6.6), at 275,960 to 277,297
GFF2685
GFF2686 - putative exported protein, at 277,305 to 278,270
GFF2686
Position (kb) 275
276
277
278 Strain fitness (log2 ratio) -1
0
1 at 274.973 kb on - strand, within GFF2683 at 275.036 kb on + strand, within GFF2683 at 275.219 kb on - strand at 275.219 kb on - strand at 275.868 kb on + strand, within GFF2684 at 275.869 kb on - strand, within GFF2684 at 275.989 kb on - strand at 276.136 kb on - strand, within GFF2685 at 276.213 kb on + strand, within GFF2685 at 276.688 kb on - strand, within GFF2685 at 276.783 kb on + strand, within GFF2685 at 276.783 kb on + strand, within GFF2685 at 276.784 kb on - strand, within GFF2685 at 276.915 kb on - strand, within GFF2685 at 276.927 kb on + strand, within GFF2685 at 277.084 kb on - strand, within GFF2685 at 277.263 kb on + strand at 277.264 kb on - strand at 277.264 kb on - strand at 277.354 kb on + strand at 277.523 kb on - strand, within GFF2686 at 277.523 kb on - strand, within GFF2686 at 277.523 kb on - strand, within GFF2686 at 277.957 kb on + strand, within GFF2686 at 277.957 kb on + strand, within GFF2686
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 274,973 - GFF2683 0.18 +0.5 275,036 + GFF2683 0.57 +0.5 275,219 - +0.2 275,219 - -0.8 275,868 + GFF2684 0.83 -1.0 275,869 - GFF2684 0.83 -0.8 275,989 - +0.5 276,136 - GFF2685 0.13 +0.2 276,213 + GFF2685 0.19 +0.3 276,688 - GFF2685 0.54 -0.9 276,783 + GFF2685 0.62 -0.4 276,783 + GFF2685 0.62 +0.1 276,784 - GFF2685 0.62 -0.6 276,915 - GFF2685 0.71 +0.1 276,927 + GFF2685 0.72 -1.5 277,084 - GFF2685 0.84 -0.1 277,263 + +0.0 277,264 - -0.1 277,264 - -0.8 277,354 + +0.4 277,523 - GFF2686 0.23 +0.3 277,523 - GFF2686 0.23 -0.6 277,523 - GFF2686 0.23 -1.4 277,957 + GFF2686 0.67 +0.3 277,957 + GFF2686 0.67 -0.4
Or see this region's nucleotide sequence