Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2446

Experiment: Ying_OrganicAcid7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2444 and GFF2445 are separated by 23 nucleotidesGFF2445 and GFF2446 are separated by 93 nucleotidesGFF2446 and GFF2447 are separated by 403 nucleotides GFF2444 - Probable transmembrane protein, at 25,333 to 26,004 GFF2444 GFF2445 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 26,028 to 26,840 GFF2445 GFF2446 - RNA-binding protein, at 26,934 to 27,341 GFF2446 GFF2447 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 27,745 to 28,914 GFF2447 Position (kb) 26 27 28Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 26.217 kb on + strand, within GFF2445at 26.217 kb on + strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.505 kb on + strand, within GFF2445at 26.505 kb on + strand, within GFF2445at 26.505 kb on + strand, within GFF2445at 26.506 kb on - strand, within GFF2445at 26.536 kb on - strand, within GFF2445at 26.536 kb on - strand, within GFF2445at 26.536 kb on - strand, within GFF2445at 26.536 kb on - strand, within GFF2445at 26.601 kb on + strand, within GFF2445at 26.601 kb on + strand, within GFF2445at 26.601 kb on + strand, within GFF2445at 26.602 kb on - strand, within GFF2445at 26.602 kb on - strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.682 kb on + strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.683 kb on - strand, within GFF2445at 26.709 kb on + strand, within GFF2445at 26.710 kb on - strand, within GFF2445at 26.938 kb on + strandat 26.989 kb on + strand, within GFF2446at 27.265 kb on + strand, within GFF2446at 27.266 kb on - strand, within GFF2446at 27.325 kb on + strandat 27.325 kb on + strandat 27.325 kb on + strandat 27.354 kb on + strandat 27.357 kb on + strandat 27.373 kb on - strandat 27.488 kb on + strandat 27.489 kb on - strandat 27.489 kb on - strandat 27.489 kb on - strandat 27.489 kb on - strandat 27.491 kb on + strandat 27.496 kb on - strandat 27.540 kb on - strandat 27.611 kb on + strandat 27.611 kb on + strandat 27.611 kb on + strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.612 kb on - strandat 27.613 kb on + strandat 27.613 kb on + strandat 27.613 kb on + strandat 27.613 kb on + strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.614 kb on - strandat 27.656 kb on - strandat 27.656 kb on - strandat 27.817 kb on + strandat 27.838 kb on + strandat 27.838 kb on + strandat 27.839 kb on - strandat 27.839 kb on - strandat 27.839 kb on - strandat 28.009 kb on + strand, within GFF2447at 28.009 kb on + strand, within GFF2447at 28.010 kb on - strand, within GFF2447at 28.238 kb on - strand, within GFF2447

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2
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26,217 + GFF2445 0.23 -1.1
26,217 + GFF2445 0.23 +0.0
26,218 - GFF2445 0.23 -0.1
26,218 - GFF2445 0.23 -0.4
26,218 - GFF2445 0.23 +0.2
26,218 - GFF2445 0.23 -0.9
26,218 - GFF2445 0.23 -0.6
26,505 + GFF2445 0.59 +0.3
26,505 + GFF2445 0.59 +1.5
26,505 + GFF2445 0.59 -1.0
26,506 - GFF2445 0.59 -0.9
26,536 - GFF2445 0.62 +0.3
26,536 - GFF2445 0.62 -0.1
26,536 - GFF2445 0.62 +1.3
26,536 - GFF2445 0.62 +1.2
26,601 + GFF2445 0.70 -0.6
26,601 + GFF2445 0.70 -0.3
26,601 + GFF2445 0.70 -2.0
26,602 - GFF2445 0.71 -0.3
26,602 - GFF2445 0.71 -0.8
26,682 + GFF2445 0.80 +1.2
26,682 + GFF2445 0.80 -0.6
26,682 + GFF2445 0.80 +0.2
26,682 + GFF2445 0.80 +0.1
26,682 + GFF2445 0.80 +0.0
26,682 + GFF2445 0.80 +0.4
26,682 + GFF2445 0.80 -1.7
26,682 + GFF2445 0.80 -0.6
26,682 + GFF2445 0.80 -0.5
26,683 - GFF2445 0.81 -0.5
26,683 - GFF2445 0.81 -1.4
26,683 - GFF2445 0.81 +0.3
26,683 - GFF2445 0.81 -0.3
26,683 - GFF2445 0.81 -0.5
26,683 - GFF2445 0.81 -1.2
26,683 - GFF2445 0.81 -0.3
26,683 - GFF2445 0.81 -0.2
26,683 - GFF2445 0.81 -0.3
26,683 - GFF2445 0.81 -0.3
26,683 - GFF2445 0.81 +0.0
26,709 + GFF2445 0.84 +0.7
26,710 - GFF2445 0.84 -0.5
26,938 + -1.4
26,989 + GFF2446 0.13 -0.4
27,265 + GFF2446 0.81 -1.1
27,266 - GFF2446 0.81 -2.5
27,325 + -0.1
27,325 + -1.3
27,325 + -0.3
27,354 + -2.0
27,357 + -1.8
27,373 - -2.3
27,488 + -0.5
27,489 - -0.4
27,489 - -0.5
27,489 - -0.5
27,489 - -0.9
27,491 + -1.8
27,496 - +1.1
27,540 - +0.3
27,611 + -0.2
27,611 + -0.3
27,611 + -0.1
27,612 - +0.0
27,612 - +0.3
27,612 - -0.5
27,612 - -0.3
27,612 - +0.2
27,612 - +0.8
27,612 - -0.5
27,612 - +0.0
27,612 - +0.7
27,612 - -0.3
27,612 - -0.3
27,613 + -0.1
27,613 + -1.8
27,613 + -0.2
27,613 + -1.5
27,614 - -1.0
27,614 - -1.1
27,614 - -1.1
27,614 - -0.2
27,614 - -1.5
27,614 - -0.9
27,614 - -1.2
27,656 - -1.1
27,656 - -0.5
27,817 + -4.2
27,838 + -4.7
27,838 + -2.4
27,839 - -3.3
27,839 - -7.0
27,839 - -2.1
28,009 + GFF2447 0.23 -5.7
28,009 + GFF2447 0.23 -1.5
28,010 - GFF2447 0.23 -4.0
28,238 - GFF2447 0.42 -2.8

Or see this region's nucleotide sequence