Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2268

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
1,151,855	+				+0.0
1,151,909	+				+0.6
1,151,909	+				+0.8
1,151,909	+				-0.2
1,151,909	+				+0.7
1,151,910	-				+0.7
1,151,910	-				+1.0
1,151,910	-				-0.1
1,151,910	-				-0.1
1,152,020	+		GFF2266	0.33	-0.7
1,152,020	+		GFF2266	0.33	+1.1
1,152,021	-		GFF2266	0.33	-0.9
1,152,230	+				+0.1
1,152,230	+				+0.1
1,152,230	+				-0.4
1,152,230	+				+0.1
1,152,231	-				+0.5
1,152,231	-				-0.2
1,152,231	-				-0.2
1,152,231	-				+1.5
1,152,231	-				-0.4
1,152,231	-				-0.2
1,152,231	-				+0.1
1,152,231	-				-0.2
1,152,231	-				+0.3
1,152,231	-				-0.1
1,152,231	-				+0.7
1,152,231	-				+1.3
1,152,239	+				+0.7
1,152,239	+				-0.9
1,152,239	+				-0.1
1,152,240	-				-0.3
1,152,240	-				+0.6
1,152,240	-				-0.2
1,152,263	+				-0.2
1,152,263	+				-0.8
1,152,263	+				+0.4
1,152,263	+				+0.5
1,152,264	-				+0.4
1,152,264	-				-0.5
1,152,264	-				-0.9
1,152,438	+		GFF2267	0.61	+0.5
1,152,438	+		GFF2267	0.61	-0.1
1,152,439	-		GFF2267	0.61	-0.0
1,152,489	+		GFF2267	0.79	-0.0
1,152,489	+		GFF2267	0.79	+0.4
1,152,489	+		GFF2267	0.79	+0.5
1,152,490	-		GFF2267	0.80	-0.3
1,152,490	-		GFF2267	0.80	-0.4
1,152,831	-		GFF2268	0.13	+0.8
1,152,831	-		GFF2268	0.13	-0.1
1,152,831	-		GFF2268	0.13	+0.4
1,152,831	-		GFF2268	0.13	-0.1
1,152,831	-		GFF2268	0.13	+0.0
1,152,857	+		GFF2268	0.15	-0.3
1,152,857	+		GFF2268	0.15	+0.1
1,152,923	+		GFF2268	0.21	+0.6
1,152,924	-		GFF2268	0.21	-0.3
1,152,924	-		GFF2268	0.21	+0.1
1,152,924	-		GFF2268	0.21	+1.0
1,152,924	-		GFF2268	0.21	-2.5
1,152,957	-		GFF2268	0.23	-1.7
1,153,022	+		GFF2268	0.29	-0.6
1,153,022	+		GFF2268	0.29	-0.2
1,153,023	-		GFF2268	0.29	-0.4
1,153,023	-		GFF2268	0.29	-1.1
1,153,023	-		GFF2268	0.29	+0.0
1,153,023	-		GFF2268	0.29	+0.1
1,153,055	+		GFF2268	0.32	-0.4
1,153,055	+		GFF2268	0.32	-0.2
1,153,055	+		GFF2268	0.32	+0.5
1,153,055	+		GFF2268	0.32	+0.1
1,153,055	+		GFF2268	0.32	+0.3
1,153,055	+		GFF2268	0.32	-0.8
1,153,055	+		GFF2268	0.32	+0.7
1,153,056	-		GFF2268	0.32	-0.2
1,153,056	-		GFF2268	0.32	-0.4
1,153,130	+		GFF2268	0.38	+0.2
1,153,130	+		GFF2268	0.38	-0.1
1,153,130	+		GFF2268	0.38	+0.5
1,153,130	+		GFF2268	0.38	+0.3
1,153,131	-		GFF2268	0.39	+0.7
1,153,131	-		GFF2268	0.39	-0.0
1,153,131	-		GFF2268	0.39	-0.9
1,153,163	+		GFF2268	0.41	+0.2
1,153,163	+		GFF2268	0.41	-0.5
1,153,164	-		GFF2268	0.41	-2.1
1,153,226	+		GFF2268	0.47	+0.4
1,153,226	+		GFF2268	0.47	-0.0
1,153,226	+		GFF2268	0.47	-0.5
1,153,226	+		GFF2268	0.47	-0.1
1,153,227	-		GFF2268	0.47	-0.1
1,153,227	-		GFF2268	0.47	+0.0
1,153,268	+		GFF2268	0.50	-0.0
1,153,268	+		GFF2268	0.50	-0.2
1,153,268	+		GFF2268	0.50	-0.1
1,153,268	+		GFF2268	0.50	-0.5
1,153,269	-		GFF2268	0.50	-0.7
1,153,269	-		GFF2268	0.50	-0.6
1,153,269	-		GFF2268	0.50	-0.3
1,153,269	-		GFF2268	0.50	-0.1
1,153,364	+		GFF2268	0.59	-1.3
1,153,364	+		GFF2268	0.59	+0.4
1,153,364	+		GFF2268	0.59	-0.3
1,153,365	-		GFF2268	0.59	-0.0
1,153,365	-		GFF2268	0.59	-0.8
1,153,365	-		GFF2268	0.59	-0.4
1,153,365	-		GFF2268	0.59	-0.6
1,153,449	-		GFF2268	0.66	-0.5
1,153,449	-		GFF2268	0.66	+0.2
1,153,691	+		GFF2268	0.87	+0.3
1,153,691	+		GFF2268	0.87	-0.3
1,153,697	+		GFF2268	0.87	-0.2
1,153,697	+		GFF2268	0.87	+0.4
1,153,697	+		GFF2268	0.87	-0.6
1,153,697	+		GFF2268	0.87	-0.2
1,153,697	+		GFF2268	0.87	-0.2
1,153,698	-		GFF2268	0.87	+0.8
1,153,698	-		GFF2268	0.87	-0.1
1,153,698	-		GFF2268	0.87	-0.2
1,153,698	-		GFF2268	0.87	+0.0
1,153,698	-		GFF2268	0.87	-0.3
1,153,698	-		GFF2268	0.87	-1.0
1,153,698	-		GFF2268	0.87	-0.3
1,153,698	-		GFF2268	0.87	-0.4
1,153,698	-		GFF2268	0.87	+0.4
1,153,698	-		GFF2268	0.87	-1.6
1,153,698	-		GFF2268	0.87	-0.4
1,153,698	-		GFF2268	0.87	-0.1
1,153,698	-		GFF2268	0.87	-0.3
1,153,698	-		GFF2268	0.87	+0.7
1,153,698	-		GFF2268	0.87	-0.0
1,153,698	-		GFF2268	0.87	-0.1
1,153,698	-		GFF2268	0.87	+0.2
1,153,718	+		GFF2268	0.89	-0.5
1,153,718	+		GFF2268	0.89	-0.5
1,153,718	+		GFF2268	0.89	+0.0
1,153,718	+		GFF2268	0.89	+0.3
1,153,719	-		GFF2268	0.89	+0.4
1,153,719	-		GFF2268	0.89	-0.1
1,153,719	-		GFF2268	0.89	-0.2
1,153,719	-		GFF2268	0.89	+1.0
1,153,852	+				-0.1
1,153,852	+				-0.8
1,153,852	+				+0.7
1,153,852	+				-0.7
1,153,853	-				-0.8
1,153,853	-				+0.6
1,153,853	-				-0.9
1,153,853	-				-0.1
1,153,854	+				+0.1
1,153,854	+				+0.3
1,153,855	-				+1.5
1,153,876	-				+0.1
1,153,876	-				+0.1
1,153,885	+				+0.2
1,153,886	-				+0.2
1,153,891	+				-0.6
1,153,891	+				+0.2
1,153,892	-				+0.1
1,153,894	+				-0.2
1,153,894	+				-0.8
1,153,894	+				+0.0
1,153,894	+				+0.4
1,153,895	-				+0.2
1,153,895	-				-0.6
1,153,895	-				+0.1
1,153,895	-				-0.8
1,153,895	-				+0.6
1,153,905	+				-0.4
1,153,905	+				+0.1
1,153,906	-				+0.4
1,153,906	-				+0.1
1,153,972	+				-0.1
1,153,972	+				-0.1
1,153,973	-				+0.7
1,153,973	-				+0.5
1,153,973	-				-0.5
1,153,975	+				+0.1
1,154,002	+		GFF2269	0.11	-0.4
1,154,003	-		GFF2269	0.11	+0.4
1,154,003	-		GFF2269	0.11	+0.5
1,154,003	-		GFF2269	0.11	+0.4
1,154,038	+		GFF2269	0.16	-0.6
1,154,038	+		GFF2269	0.16	-0.2
1,154,329	+		GFF2269	0.55	+0.3
1,154,330	-		GFF2269	0.55	+0.3
1,154,330	-		GFF2269	0.55	-0.0
1,154,464	+		GFF2269	0.73	+0.2
1,154,464	+		GFF2269	0.73	+0.5
1,154,464	+		GFF2269	0.73	-0.1
1,154,464	+		GFF2269	0.73	+0.2
1,154,464	+		GFF2269	0.73	+0.2
1,154,465	-		GFF2269	0.73	+0.7
1,154,465	-		GFF2269	0.73	+0.3
1,154,465	-		GFF2269	0.73	-0.1
1,154,465	-		GFF2269	0.73	+0.1
1,154,465	-		GFF2269	0.73	-0.4
1,154,465	-		GFF2269	0.73	-0.4
1,154,465	-		GFF2269	0.73	+0.3
1,154,465	-		GFF2269	0.73	-0.2
1,154,465	-		GFF2269	0.73	+0.2
1,154,536	+		GFF2269	0.82	+0.5
1,154,536	+		GFF2269	0.82	+0.7
1,154,536	+		GFF2269	0.82	-0.4
1,154,537	-		GFF2269	0.82	+0.2
1,154,537	-		GFF2269	0.82	-0.4
1,154,537	-		GFF2269	0.82	-0.1
1,154,537	-		GFF2269	0.82	-0.4
1,154,537	-		GFF2269	0.82	-0.2
1,154,539	+		GFF2269	0.82	-0.2
1,154,539	+		GFF2269	0.82	+0.0
1,154,540	-		GFF2269	0.83	-0.3
1,154,540	-		GFF2269	0.83	-0.8
1,154,540	-		GFF2269	0.83	+2.1
1,154,650	+				+0.3
1,154,650	+				+0.1
1,154,650	+				-0.4
1,154,651	-				-0.1
1,154,761	+				-0.3
1,154,761	+				-0.5
1,154,761	+				+0.5
1,154,761	+				-0.2
1,154,761	+				+0.8
1,154,762	-				-0.7
1,154,762	-				-0.2
1,154,762	-				+0.4
1,154,794	+				+0.3
1,154,794	+				-0.4
1,154,794	+				+0.6
1,154,794	+				+0.4
1,154,794	+				+0.2
1,154,794	+				+0.0
1,154,794	+				-0.3
1,154,794	+				+0.1
1,154,794	+				-2.2
1,154,794	+				-0.0
1,154,794	+				+0.0
1,154,794	+				+1.6
1,154,794	+				+0.6
1,154,795	-				+0.3
1,154,795	-				+0.6
1,154,795	-				-0.6
1,154,795	-				+0.8
1,154,795	-				-0.9
1,154,795	-				-0.3
1,154,795	-				-0.2
1,154,795	-				-0.3
1,154,795	-				+0.9
1,154,797	+				-0.1
1,154,797	+				-1.3
1,154,797	+				+0.2
1,154,797	+				+0.6
1,154,797	+				-0.2
1,154,797	+				-1.1
1,154,798	-				+1.3
1,154,798	-				-1.5
1,154,798	-				+0.2
1,154,798	-				+0.0
1,154,798	-				+0.1
1,154,798	-				-0.1
1,154,798	-				+0.1
1,154,798	-				-0.4
1,154,813	+				+0.8
1,154,830	+		GFF2270	0.11	-0.2
1,154,830	+		GFF2270	0.11	-0.1
1,154,831	-		GFF2270	0.11	-0.4