Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2193

Experiment: Ying_OrganicAcid7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 2
1,081,525	+				-0.3
1,081,526	-				+0.2
1,081,526	-				-1.5
1,081,526	-				+0.4
1,082,101	+		GFF2192	0.67	+0.1
1,082,101	+		GFF2192	0.67	+0.4
1,082,101	+		GFF2192	0.67	+0.0
1,082,101	+		GFF2192	0.67	+0.5
1,082,102	-		GFF2192	0.67	-0.4
1,082,102	-		GFF2192	0.67	-0.5
1,082,102	-		GFF2192	0.67	+0.7
1,082,102	-		GFF2192	0.67	-0.7
1,082,210	-		GFF2192	0.78	+0.2
1,082,210	-		GFF2192	0.78	-0.1
1,082,221	+		GFF2192	0.79	-0.1
1,082,221	+		GFF2192	0.79	+0.2
1,082,221	+		GFF2192	0.79	-0.1
1,082,222	-		GFF2192	0.79	+0.3
1,082,222	-		GFF2192	0.79	+0.1
1,082,222	-		GFF2192	0.79	+0.0
1,082,222	-		GFF2192	0.79	-0.0
1,082,222	-		GFF2192	0.79	+0.4
1,082,478	+				+1.2
1,082,478	+				+0.5
1,082,478	+				-0.4
1,082,478	+				+0.3
1,082,478	+				+0.5
1,082,478	+				-1.0
1,082,478	+				+0.2
1,082,479	-				+0.1
1,082,479	-				+0.3
1,082,479	-				+0.3
1,082,479	-				+0.3
1,082,479	-				-0.2
1,082,595	+				-1.0
1,082,595	+				-0.2
1,082,595	+				+0.0
1,082,595	+				+0.6
1,082,596	-				+0.8
1,082,596	-				+0.2
1,082,610	+				+0.3
1,082,610	+				+0.5
1,082,610	+				-0.3
1,082,625	+				+0.1
1,082,625	+				+0.6
1,082,625	+				-0.4
1,082,625	+				-0.3
1,082,626	-				-0.3
1,082,626	-				+0.8
1,082,626	-				-0.8
1,082,626	-				+0.3
1,082,626	-				+0.7
1,082,626	-				-0.2
1,082,778	+		GFF2193	0.17	-0.2
1,082,778	+		GFF2193	0.17	-0.3
1,082,778	+		GFF2193	0.17	-0.2
1,082,778	+		GFF2193	0.17	-1.8
1,082,779	-		GFF2193	0.17	+0.1
1,082,793	+		GFF2193	0.18	+0.1
1,082,794	-		GFF2193	0.18	+0.0
1,082,794	-		GFF2193	0.18	-0.5
1,082,794	-		GFF2193	0.18	-0.0
1,082,830	-		GFF2193	0.21	-0.2
1,082,830	-		GFF2193	0.21	-0.6
1,082,847	+		GFF2193	0.22	+0.0
1,083,093	+		GFF2193	0.39	-0.2
1,083,093	+		GFF2193	0.39	+1.4
1,083,094	-		GFF2193	0.39	-0.7
1,083,094	-		GFF2193	0.39	+1.1
1,083,094	-		GFF2193	0.39	+1.3
1,083,108	+		GFF2193	0.40	+0.1
1,083,108	+		GFF2193	0.40	-0.3
1,083,108	+		GFF2193	0.40	-0.3
1,083,108	+		GFF2193	0.40	-0.5
1,083,108	+		GFF2193	0.40	+0.2
1,083,255	+		GFF2193	0.50	+0.4
1,083,291	+		GFF2193	0.52	-0.1
1,083,291	+		GFF2193	0.52	-0.1
1,083,291	+		GFF2193	0.52	-0.4
1,083,291	+		GFF2193	0.52	+0.7
1,083,292	-		GFF2193	0.52	-0.6
1,083,292	-		GFF2193	0.52	+0.2
1,083,292	-		GFF2193	0.52	-0.4
1,083,292	-		GFF2193	0.52	-0.6
1,083,292	-		GFF2193	0.52	-3.2
1,083,292	-		GFF2193	0.52	+0.1
1,083,358	-		GFF2193	0.57	+0.8
1,083,438	+		GFF2193	0.62	-0.1
1,083,438	+		GFF2193	0.62	+0.0
1,083,439	-		GFF2193	0.62	+0.4
1,083,571	-		GFF2193	0.71	+1.3
1,083,573	+		GFF2193	0.71	-0.6
1,083,573	+		GFF2193	0.71	+0.2
1,083,573	+		GFF2193	0.71	-0.1
1,083,574	-		GFF2193	0.71	+0.6
1,083,574	-		GFF2193	0.71	-0.5
1,083,594	+		GFF2193	0.73	-0.9
1,083,594	+		GFF2193	0.73	+0.4
1,083,594	+		GFF2193	0.73	-0.1
1,083,594	+		GFF2193	0.73	+0.6
1,083,595	-		GFF2193	0.73	+0.1
1,083,595	-		GFF2193	0.73	-0.0
1,083,943	-				+0.1
1,083,943	-				+0.8
1,083,967	-				+0.2
1,084,111	-		GFF2194	0.20	-0.7
1,084,129	-		GFF2194	0.24	+0.0
1,084,176	+		GFF2194	0.35	-0.2
1,084,176	+		GFF2194	0.35	-1.7
1,084,176	+		GFF2194	0.35	-0.1
1,084,176	+		GFF2194	0.35	+0.1
1,084,177	-		GFF2194	0.35	-0.3
1,084,189	-		GFF2194	0.38	+0.2
1,084,272	+		GFF2194	0.56	-0.4
1,084,272	+		GFF2194	0.56	-1.5
1,084,404	+		GFF2194	0.85	+0.7
1,084,405	-		GFF2194	0.86	+1.8
1,084,496	+				-0.1
1,084,496	+				+0.6
1,084,497	-				-0.1
1,084,838	+		GFF2195	0.36	+0.7
1,084,839	-		GFF2195	0.36	-0.0
1,084,893	-		GFF2195	0.41	-0.2
1,084,970	+		GFF2195	0.49	+0.8
1,084,970	+		GFF2195	0.49	-0.2
1,084,970	+		GFF2195	0.49	+0.5
1,084,971	-		GFF2195	0.49	-0.1
1,084,974	-		GFF2195	0.50	+1.0