Experiment: Ying_OrganicAcid7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2107 and GFF2108 are separated by 2 nucleotides GFF2108 and GFF2109 are separated by 194 nucleotides
GFF2107 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 994,696 to 995,796
GFF2107
GFF2108 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 995,799 to 996,956
GFF2108
GFF2109 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 997,151 to 999,349
GFF2109
Position (kb) 995
996
997 Strain fitness (log2 ratio) -2
-1
0
1 at 995.051 kb on + strand, within GFF2107 at 995.051 kb on + strand, within GFF2107 at 995.052 kb on - strand, within GFF2107 at 995.105 kb on + strand, within GFF2107 at 995.105 kb on + strand, within GFF2107 at 995.105 kb on + strand, within GFF2107 at 995.114 kb on + strand, within GFF2107 at 995.115 kb on - strand, within GFF2107 at 995.396 kb on + strand, within GFF2107 at 996.041 kb on - strand, within GFF2108 at 996.451 kb on + strand, within GFF2108 at 996.452 kb on - strand, within GFF2108 at 996.943 kb on + strand at 996.943 kb on + strand at 996.944 kb on - strand at 996.944 kb on - strand at 996.944 kb on - strand at 996.944 kb on - strand at 996.944 kb on - strand at 996.944 kb on - strand at 996.944 kb on - strand at 997.150 kb on + strand at 997.154 kb on + strand at 997.154 kb on + strand at 997.154 kb on + strand at 997.155 kb on - strand at 997.155 kb on - strand at 997.155 kb on - strand at 997.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2 remove 995,051 + GFF2107 0.32 +0.2 995,051 + GFF2107 0.32 -0.5 995,052 - GFF2107 0.32 +1.0 995,105 + GFF2107 0.37 -0.2 995,105 + GFF2107 0.37 +0.3 995,105 + GFF2107 0.37 +0.1 995,114 + GFF2107 0.38 +0.2 995,115 - GFF2107 0.38 +0.3 995,396 + GFF2107 0.64 -0.2 996,041 - GFF2108 0.21 +0.3 996,451 + GFF2108 0.56 -0.4 996,452 - GFF2108 0.56 +1.0 996,943 + -0.3 996,943 + -0.4 996,944 - -0.8 996,944 - -0.1 996,944 - +0.5 996,944 - -0.2 996,944 - -0.0 996,944 - +1.1 996,944 - +0.4 997,150 + +0.0 997,154 + -0.6 997,154 + -0.2 997,154 + -2.7 997,155 - -0.4 997,155 - -0.2 997,155 - +1.5 997,155 - +0.0
Or see this region's nucleotide sequence