Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2000

Experiment: Ying_OrganicAcid7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1998 and GFF1999 are separated by 10 nucleotidesGFF1999 and GFF2000 are separated by 209 nucleotidesGFF2000 and GFF2001 are separated by 3 nucleotides GFF1998 - Fumarylacetoacetase (EC 3.7.1.2), at 874,578 to 875,900 GFF1998 GFF1999 - Membrane protein TerC, possibly involved in tellurium resistance, at 875,911 to 876,606 GFF1999 GFF2000 - Uracil permease, at 876,816 to 878,117 GFF2000 GFF2001 - hypothetical protein, at 878,121 to 879,380 GFF2001 Position (kb) 876 877 878 879Strain fitness (log2 ratio) -2 -1 0 1at 876.002 kb on + strand, within GFF1999at 876.002 kb on + strand, within GFF1999at 876.002 kb on + strand, within GFF1999at 876.002 kb on + strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.003 kb on - strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.029 kb on + strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.030 kb on - strand, within GFF1999at 876.348 kb on - strand, within GFF1999at 876.348 kb on - strand, within GFF1999at 876.629 kb on + strandat 876.647 kb on + strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.648 kb on - strandat 876.687 kb on - strandat 876.715 kb on + strandat 876.715 kb on + strandat 876.715 kb on + strandat 876.715 kb on + strandat 876.716 kb on - strandat 876.716 kb on - strandat 876.724 kb on + strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 876.725 kb on - strandat 877.059 kb on + strand, within GFF2000at 877.059 kb on + strand, within GFF2000at 877.059 kb on + strand, within GFF2000at 877.060 kb on - strand, within GFF2000at 877.060 kb on - strand, within GFF2000at 877.060 kb on - strand, within GFF2000at 877.060 kb on - strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.440 kb on + strand, within GFF2000at 877.441 kb on - strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.731 kb on + strand, within GFF2000at 877.731 kb on + strand, within GFF2000at 877.731 kb on + strand, within GFF2000at 877.732 kb on - strand, within GFF2000at 877.732 kb on - strand, within GFF2000at 877.732 kb on - strand, within GFF2000at 877.764 kb on + strand, within GFF2000at 877.770 kb on + strand, within GFF2000at 877.770 kb on + strand, within GFF2000at 877.770 kb on + strand, within GFF2000at 877.770 kb on + strand, within GFF2000at 877.771 kb on - strand, within GFF2000at 877.771 kb on - strand, within GFF2000at 877.771 kb on - strand, within GFF2000at 877.771 kb on - strand, within GFF2000at 878.007 kb on + strandat 878.008 kb on - strandat 878.076 kb on + strandat 878.077 kb on - strandat 878.354 kb on - strand, within GFF2001at 878.380 kb on + strand, within GFF2001at 878.380 kb on + strand, within GFF2001at 878.380 kb on + strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.929 kb on + strand, within GFF2001at 878.929 kb on + strand, within GFF2001at 878.930 kb on - strand, within GFF2001at 878.930 kb on - strand, within GFF2001at 878.930 kb on - strand, within GFF2001at 878.959 kb on + strand, within GFF2001at 878.959 kb on + strand, within GFF2001at 878.959 kb on + strand, within GFF2001at 878.960 kb on - strand, within GFF2001at 878.960 kb on - strand, within GFF2001at 878.960 kb on - strand, within GFF2001

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 2
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876,002 + GFF1999 0.13 +0.2
876,002 + GFF1999 0.13 +0.1
876,002 + GFF1999 0.13 -0.2
876,002 + GFF1999 0.13 -0.0
876,003 - GFF1999 0.13 -0.9
876,003 - GFF1999 0.13 +0.4
876,003 - GFF1999 0.13 +0.7
876,003 - GFF1999 0.13 +0.1
876,003 - GFF1999 0.13 -1.7
876,029 + GFF1999 0.17 -0.5
876,029 + GFF1999 0.17 +0.5
876,029 + GFF1999 0.17 +0.1
876,029 + GFF1999 0.17 +0.2
876,029 + GFF1999 0.17 +0.0
876,029 + GFF1999 0.17 -0.3
876,030 - GFF1999 0.17 -0.1
876,030 - GFF1999 0.17 -0.8
876,030 - GFF1999 0.17 +0.2
876,030 - GFF1999 0.17 +0.3
876,030 - GFF1999 0.17 -0.1
876,030 - GFF1999 0.17 +0.9
876,030 - GFF1999 0.17 -0.1
876,030 - GFF1999 0.17 +0.0
876,348 - GFF1999 0.63 +0.1
876,348 - GFF1999 0.63 +0.4
876,629 + -0.4
876,647 + -0.0
876,648 - -0.2
876,648 - -0.1
876,648 - -0.1
876,648 - +0.7
876,648 - +1.3
876,648 - -0.5
876,648 - +1.4
876,648 - -0.2
876,648 - -1.8
876,687 - +1.0
876,715 + +1.1
876,715 + -0.4
876,715 + +0.2
876,715 + -0.5
876,716 - +0.5
876,716 - -0.3
876,724 + +0.0
876,725 - -1.5
876,725 - +0.7
876,725 - -0.2
876,725 - +0.2
876,725 - -0.4
876,725 - -0.6
877,059 + GFF2000 0.19 -0.8
877,059 + GFF2000 0.19 -0.2
877,059 + GFF2000 0.19 -1.9
877,060 - GFF2000 0.19 +1.5
877,060 - GFF2000 0.19 -0.1
877,060 - GFF2000 0.19 -0.2
877,060 - GFF2000 0.19 +0.3
877,179 + GFF2000 0.28 +0.3
877,179 + GFF2000 0.28 -0.3
877,179 + GFF2000 0.28 -0.6
877,179 + GFF2000 0.28 +0.3
877,180 - GFF2000 0.28 +0.2
877,180 - GFF2000 0.28 -0.1
877,180 - GFF2000 0.28 -0.2
877,180 - GFF2000 0.28 +0.1
877,440 + GFF2000 0.48 +0.0
877,441 - GFF2000 0.48 -1.1
877,653 + GFF2000 0.64 -0.8
877,653 + GFF2000 0.64 -0.1
877,653 + GFF2000 0.64 +0.9
877,653 + GFF2000 0.64 -0.4
877,653 + GFF2000 0.64 +1.5
877,653 + GFF2000 0.64 +0.2
877,654 - GFF2000 0.64 +0.1
877,654 - GFF2000 0.64 -1.1
877,654 - GFF2000 0.64 -0.0
877,654 - GFF2000 0.64 +0.3
877,654 - GFF2000 0.64 -0.6
877,654 - GFF2000 0.64 -0.7
877,654 - GFF2000 0.64 -2.4
877,654 - GFF2000 0.64 -0.3
877,654 - GFF2000 0.64 -0.3
877,731 + GFF2000 0.70 -0.8
877,731 + GFF2000 0.70 +0.5
877,731 + GFF2000 0.70 -0.6
877,732 - GFF2000 0.70 +0.3
877,732 - GFF2000 0.70 -0.2
877,732 - GFF2000 0.70 +0.2
877,764 + GFF2000 0.73 +1.3
877,770 + GFF2000 0.73 +0.6
877,770 + GFF2000 0.73 -0.2
877,770 + GFF2000 0.73 -0.1
877,770 + GFF2000 0.73 +0.1
877,771 - GFF2000 0.73 -0.4
877,771 - GFF2000 0.73 +0.5
877,771 - GFF2000 0.73 +0.3
877,771 - GFF2000 0.73 -1.1
878,007 + -0.0
878,008 - -0.8
878,076 + +0.2
878,077 - -0.0
878,354 - GFF2001 0.18 -0.1
878,380 + GFF2001 0.21 +1.0
878,380 + GFF2001 0.21 -0.2
878,380 + GFF2001 0.21 +0.3
878,381 - GFF2001 0.21 -0.3
878,381 - GFF2001 0.21 -0.2
878,381 - GFF2001 0.21 -0.4
878,381 - GFF2001 0.21 +0.6
878,381 - GFF2001 0.21 +0.1
878,381 - GFF2001 0.21 -0.3
878,381 - GFF2001 0.21 +0.5
878,381 - GFF2001 0.21 +0.2
878,381 - GFF2001 0.21 -1.1
878,929 + GFF2001 0.64 +0.3
878,929 + GFF2001 0.64 +0.0
878,930 - GFF2001 0.64 +0.0
878,930 - GFF2001 0.64 -0.2
878,930 - GFF2001 0.64 +0.0
878,959 + GFF2001 0.67 -0.2
878,959 + GFF2001 0.67 +0.7
878,959 + GFF2001 0.67 +1.3
878,960 - GFF2001 0.67 -0.2
878,960 - GFF2001 0.67 -0.6
878,960 - GFF2001 0.67 -0.5

Or see this region's nucleotide sequence